LOC111196215


Basic Information

Item Value
gene id LOC111196215
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39514469 ~ 39524274 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002652030.1
TCGTTCGTTtataaattctgtttttatttgactttgcattttttaaatcatggaCTGAACTGCAACTGCAGCACCACCACTGACCTGCAGGCGGTGTCAAGTCTTAAGCACAGTCAAAACAATTTGTTCTGCGCTAGCCCCCACAGCGAAAGTGCTTCCTCATCTCAGCGCTCCACCAGGTCCCGCGGCTTCTCTCGGAAACAGGGCGTTGAAGAGTGTTGATGCTAAACGCCACCAACCTGGCATCTGGGCTCGCTGATACTGCCTGAactggaaataaagaaaaacagaagGTGCTCCTGCTGAAACTGGTCTCCTATCTCACGTAGCTTTCGTCCAATCTGCACCTCCACACTCATCCCCTCCTGAGCATCTTCCTCCTTTCTGTCTGGCCTGCCTCCATCTTCCACCTCTTCCTCCTGCTCTTCTTCTCTTGCTGCAGATCCAGTCGGACTTGACACCAACCCCAACCCCACTGTACTGTGCAGAGGCCGGTTGAGTGGCCCAGTTGTCCCACAAGAGG

Function

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002652030.1 True 523 lncRNA 0.51 4 39514469 39524274

Neighbor

gene id symbol gene type direction distance location
LOC103041222 NA coding downstream 60584 39441070 ~ 39453885 (-)
rad51 rad51 coding downstream 75426 39431663 ~ 39439043 (-)
zc3h14 zc3h14,LOC102797374 coding downstream 105551 39399006 ~ 39408918 (-)
tmed10 tmed10 coding downstream 126977 39382200 ~ 39387492 (-)
LOC103042954 NA coding downstream 153034 39356694 ~ 39361435 (-)
LOC103039762 flvcr2b,LOC108432874,LOC103039762,LOC108242486,LOC108255188,LOC107697188 coding upstream 1747 39526021 ~ 39557879 (-)
LOC103039151 LOC103039151,LOC108432876 coding upstream 38892 39563166 ~ 39565797 (-)
LOC103033783 LOC103033783 coding upstream 62209 39586483 ~ 39587636 (-)
LOC103033459 LOC103033783 coding upstream 68161 39592435 ~ 39593599 (-)
LOC111191800 LOC108432802,LOC108432823,LOC108432818 coding upstream 70762 39595036 ~ 39596254 (-)
G24911 NA non-coding downstream 15003 39499043 ~ 39499466 (-)
LOC111196213 NA non-coding downstream 34125 39472824 ~ 39480344 (-)
LOC111191798 NA non-coding downstream 305204 39207480 ~ 39209265 (-)
G24860 NA non-coding downstream 326191 39187782 ~ 39188278 (-)
G24839 cf166,LOC103047239,LOC105017858,LOC100499587 non-coding downstream 361018 39147559 ~ 39153451 (-)
G24964 NA non-coding upstream 200181 39724455 ~ 39732479 (-)
G24992 NA non-coding upstream 295002 39819276 ~ 39825981 (-)
G24997 NA non-coding upstream 321099 39845373 ~ 39848209 (-)
G25128 NA non-coding upstream 859327 40383601 ~ 40421173 (-)
G25174 NA non-coding upstream 1201525 40725799 ~ 40726362 (-)
G24903 NA other downstream 56280 39455236 ~ 39458189 (-)
LOC103043888 LOC108432835 other downstream 167553 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other downstream 189767 39309726 ~ 39324702 (-)
smim8 smim8 other downstream 587476 38925623 ~ 38926993 (-)
LOC103024598 LOC108411439 other downstream 591552 38887626 ~ 38922917 (-)
LOC111196341 NA other upstream 650988 40175262 ~ 40230868 (-)
G25265 slco5a1 other upstream 1690147 41214421 ~ 41218829 (-)
arhgap11a NA other upstream 1911767 41436041 ~ 41442494 (-)
LOC111196508 NA other upstream 2331821 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 2344750 41869024 ~ 41880424 (-)

Expression


Co-expression Network