LOC111196462


Basic Information

Item Value
gene id LOC111196462
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41507988 ~ 41519295 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002652130.1
TCAGTGTCTCCCCTGTAAATTTACAAGGTCTGTCACATTGCGGATGAGTTGCTGTGGTTCATaaacactttgactttttttaatattactcATAAATAATCATCAGGGTAGAAATGTCACCACCTGACTTGTTGTAATGGTGACCTCCTATTACAGAACAACGCTGAAGTTCAGTAAGCTCTTGTTTGTTCTCATTAATACGTGCAAAGGTAAGTGCTTGGTTTTTTACACCTGTGAAAGTGGGACTGAATGAAACATGTGAATTATGTGATTTGAGATGTCCCAGTAGCTTTGTTAATTTAGATCAGAGTTTTCCCAAATTCCACCACACCTGATCCAAGTAAAAAACTGATGAGCTTTTGCTTAGACAAACCAGGTGCGTTTGAATAGGTGAACACTTAATACAGGAGGAGGGCAGTGGTACCCCAGAACCATGATTGAGAATCACTCATATAATGTACTCTATATGCTTTAAGGTCAATCATTTCTCTTAAATGCTCTGTCATAAATGCATGCAGTCAAGTAGCTGAATTCATGACACTTTTTATCTCCTTTTATTCCTTGAGAATACAGCCACATGATCAGATAAACTCCCTTCATTTTTCCGGAGTAAATTACCTCATTACCATTATTACGCAGTGAAACAGCAGGCTGGCTATTTACTAAACCCACTTCGGCTGCAGAGATGAAAACCCCACAAACGTGGCACGTGCAGAAATCTGGACAGGCTTCTGTTTAAAAGACTGCAGCCAATTCTCTGTCTGGCTGACTGTCTGACTTCTGTCTGCCTTTTGAAGACCCATAGCAAGCTGTCCAGGAGTTCATGCTGCACAGAGAAACAAACACTTATGTGTTATTGCTGTACAACTGTGCTTTACAATTCAGTCCTCACTCAGACTGTTGAAAAATCTCAGTGTGCCATCTGCCTAACCGTcaatataaagtatttactttaattcttatatttcttacttattatttataacaCATATACAATATTTATCATTGTGATTATGTATTAGTTTCATCCatgtttttatggtatttttagtATTGGGAAAGTTACTTCAGATGTTTATACAATGTTAGTGTTTGTAAGGCAAACTGTTATTATGTCACAGGTTTCCAGAACATTCATGGACACACATTATTTTTGGAGCGTTACAGGCTacccttcctggaaccttttaaTAACATTATTCAAAATTCCTATAGCGGTTCTGCTAGCTCAACAGCTACATTATGATTTGGCTCATCAATCTTCTGTTCTCACAGCAAAGTCATATGTAAATTTTGACCAGTTAATTCAGACAGGCAACATTTTCATCATAAATAATATCTTTTGAACTTCAGTTCACAGAAATCCTAACAGAAAATGGAAATGCAAGGCTATAGCTAAATAGAAGCATGCTAACCTTGGCTATTTGCCAACCTTAATGATACAACAATGCTAGGTACCAAACGGAGTGTCTCATTTCCTTTTAGCGCAAACTACCCAGCTTACAGAGAACATCAGAATGCTTAGTAAAAGTTTGCATGTAACGTCACAGAAATAATATTACAGGAATGTTATGACAGTGTTTCATGACAACATTATAAGAACGTATCCTCACATAATGTTCACAGCTTGATGAATACTAACATTTTGGAAATGtcaaaagtaacattcccaaaactaaaaattaaaacattaacacaAACAGCACTGAGCTAGAATTTGAGCTAGCACCGTGCTACAAAAATGCAGGCTAGCCTAGATCCTGAGGTACTGAAGTAATGTAAAAGACAAGAATATAAATTTCAAATTTAAACACAAAAGAATctaaactaatttaaactatCTGTTGCATGTTGTCTGAGATAATGAAAACCTGAGGGACCCAACTGTCCAAGGCCTGCAATATGTTGGAGTGTGCAGTTAAGAGTGATTGCTGGAATTGCAAACTGCAGTGGAGTGGAACTGAGCTTGGCCGAAAGCAGtgaagaaagaataaaatagtTGTCTCCAGCAAGTGTGCGTCAGAGAAGATCATGAAGGACTCTGTGCCTTATCCGGTTGCTATTGGACACGCTGAGGATTGACAGCATCAGCATCATAAGGATGATTCAACTTTGGGTGTCACCAAAGCTAATGGAAGGACTGCCgtgcacagtcacacacacacacacaccacacacacacacacacaaacacagctcagAGAGTCTaaccatattttattaatacattttacaggTCCTTCTGTTTCAGCTCTATGTTTACTATGTTTAAAAACGGCATCTTATACATATAGACAAGTCTAAAAGGTAGGTTCTCATCATGATTATAAAGGACAGCCCTTCACACTCTCCGTAATACAGTATCCAAGtactaaaaacattaatatatacattataatgcaAAAACTACTGAATCACAAGATTATTCTTTGTCTCTTCAAAAATCAAGGGTAAATTTTGCTTCTGTTGGTTTatttgtctctactgtccagtgaaagctttctactagattttggagcatgctgtgaagatttgataagagcattagtgaggtcaggttaTCAGCACAGCACCTCGTCCCCAACTTCACCAaaaagggtaacactttatttgggtGGTTTATGTCTCATTTTCCTTGAACtttgcagtttttaaaatttgagccccatgaatcctgacattgttatcttgttAATGATAACAAGACTGCATTATAACTAAATTTGGACTATTTTTAGacctttataataaataaacagaacagtTATGAGGACATATATTTACTGGATACACTGTAACCTTTAATGCACATCACTTATTCGTTGCATTTCACCATGAAGGACATCTTTAGCTTTTCTGTTAGAACATGTTTACCAAACATACACAACTCTGACTTGCCTCAGCCAACTGCTCTCCTGACCAGAAAATGAATTAGCCATCGTTTCATTAGTGTGATCAGCCAGAGGAACAGAGCGCTCTGATGCAGACCCTTTAATCCGTGCAAGGGAAAATATGCTAACGGCAAAATGCTAATTACACCAGCCACTTTTAGATAAGAGTGTTTTATCGAGTCATGCAGTTCATCCTGACAAATGTTGGAACAAATCCAAAACTAATGACCTTAgagcactttaaaatatttgagtCATTTAAGATATGCTACTGTCATAATGCAATGGGATAATCTGTCAGATCTATTTGAGTGTAAATCAGACAAATTCCTgtcccttttttttaaacacagcttgTATAATTAGTTTGAATGACTATGCTTTCTTCTTAGCAATGGGACAAAACTCTGCAAGAAAAAGCAAGAACTTCAATGTGCtgtatgatgtaaaaaaaaaaaaaagtaagaatctGAGAACATGACGTGAGATGTGAACAGTAAgtctattttatctattttattatttattttaaaagtacatgtttaaataaatacaaacatacaaTACAGCTTTATTTATGTGTCTCTGTTAACAAAACACACTACAAGGAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002652130.1 True 3504 lncRNA 0.36 3 41507988 41519295

Neighbor

gene id symbol gene type direction distance location
fmn1 fmn1 coding upstream 79818 41403996 ~ 41428170 (+)
aven NA coding upstream 228051 41254714 ~ 41279937 (+)
emc7 emc7,LOC107549094,LOC107671783,LOC107756596,LOC107721381,LOC107601948 coding upstream 258417 41244537 ~ 41249571 (+)
katnbl1 katnbl1 coding upstream 265640 41236256 ~ 41242348 (+)
slco5a1 slco5a1,LOC107741005,LOC107686683,LOC108256392,LOC107695420,LOC107584939,LOC107758302 coding upstream 291838 41122279 ~ 41216150 (+)
ywhaq ywhaq,LOC107721301,LOC107549101,LOC107756586,LOC107668239 coding downstream 14810 41534105 ~ 41545497 (+)
LOC103041996 LOC108410928 coding downstream 28679 41547974 ~ 41567160 (+)
LOC103038512 asap2,LOC108410950,LOC108257785,LOC105894440 coding downstream 69457 41588752 ~ 41621272 (+)
LOC103039741 mboat2b,LOC103039741,LOC108410960,LOC108257786,LOC107668249,LOC107601827,LOC107693237,LOC107756580,LOC106607658 coding downstream 115660 41634955 ~ 41705390 (+)
kidins220 LOC103040274,LOC108410983,LOC108258057 coding downstream 189475 41708770 ~ 41733546 (+)
G25355 NA non-coding upstream 10249 41495866 ~ 41497739 (+)
G25351 NA non-coding upstream 21720 41485489 ~ 41486268 (+)
G25339 NA non-coding upstream 65449 41439812 ~ 41442539 (+)
G25287 NA non-coding upstream 211300 41293464 ~ 41296688 (+)
G25251 NA non-coding upstream 284503 41222118 ~ 41223485 (+)
G25407 NA non-coding downstream 56988 41576283 ~ 41577638 (+)
G25426 NA non-coding downstream 68804 41588099 ~ 41588458 (+)
G25428 NA non-coding downstream 105486 41624781 ~ 41632161 (+)
G25458 NA non-coding downstream 214708 41734003 ~ 41734204 (+)
G25459 NA non-coding downstream 215292 41734587 ~ 41735710 (+)
G24972 NA other upstream 1682270 39819276 ~ 39825718 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 2110110 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 2167017 39325083 ~ 39340971 (+)
G24719 NA other upstream 2462207 39045170 ~ 39045781 (+)
G24583 NA other upstream 2560766 38939357 ~ 38947222 (+)
G25601 NA other downstream 872345 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 978427 42497722 ~ 42516642 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 1740325 43259620 ~ 43262099 (+)
rps29 NA other downstream 1841174 43360469 ~ 43363444 (+)
G25879 NA other downstream 1902476 43421771 ~ 43422046 (+)

Expression


Co-expression Network