LOC111197214


Basic Information

Item Value
gene id LOC111197214
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44614210 ~ 44615581 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002652393.1
gatgagcaatcgattcagtcttcaatcgagccaacaaccagccaatcacatcacgctccgaagatcacgtgacaggtaGCGCCTCACGGCTCAGAGCCGCTCAACGCGGCTCACAGCCCCCTCCGCTGCTCCTCTCGAGTaggttgaaaagaagatggagaagtTTCAGCTTGCAGCTATGGAGAGTTCACCACGAAAAGAACGAAGTCAAAGAATACAAAGATCTGTCCATATTCTGAAGTCACCACTTGAAGAttttatgcagaattatttggattatgaataggaaccacattatttgcaacagcttttattatttatacaaacaagATGAACATGATATGATGTGCCAGAATATAGGGAGGCTgcctaaaacatacaaaaaaaaatacagaacacatgtaaacaactaaagaaaaacagaacatggcacatgtaaataaatcaaataaacacagcacagactgcatgaaattggatttctttatttgttctttaaaagtttggagaaaggaaacctgtGGAATACAAAAGAAACTTGAAAAATTACTGCATTTGATACATggatataattaaacattttaagaacatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002652393.1 True 593 lncRNA 0.38 2 44614210 44615581

Neighbor

gene id symbol gene type direction distance location
LOC103028241 runx2b,runx2,LOC103028241,LOC108410521,LOC108258149,LOC107678859,LOC107726745 coding downstream 38935 44525886 ~ 44575275 (-)
LOC103042571 stmn4,LOC108439832,LOC108257558 coding downstream 246370 44360099 ~ 44367840 (-)
LOC103041948 LOC108439850 coding downstream 289753 44321703 ~ 44324457 (-)
LOC103028959 NA coding downstream 296373 44311254 ~ 44317837 (-)
LOC103040630 znf395 coding downstream 305512 44298947 ~ 44308698 (-)
mut mut,LOC107726757,LOC107697172,LOC107726528 coding upstream 121586 44737167 ~ 44760205 (-)
LOC103027014 mfsd2b,si:dkeyp-115a10.3,LOC107750078,LOC107697177 coding upstream 193245 44808826 ~ 44851093 (-)
klhl29 klhl29,LOC107667613,LOC107742703,LOC107697176 coding upstream 367663 44983244 ~ 45315255 (-)
trib2 trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179 coding upstream 743329 45358910 ~ 45365846 (-)
LOC103023605 napb,LOC106610947,LOC106599679,LOC103023605,LOC108411873,LOC108258064,LOC107756672,LOC107742707,LOC107593246,LOC107667620 coding upstream 825857 45441438 ~ 45448166 (-)
G26158 cdc42bpb,LOC106607646 non-coding downstream 169248 44441661 ~ 44444962 (-)
G26154 NA non-coding downstream 236683 44377323 ~ 44377527 (-)
G26084 elp3,LOC107732362,LOC107698368,LOC107553498,LOC107696156,LOC107599080 non-coding downstream 389937 44221013 ~ 44224273 (-)
G26083 NA non-coding downstream 415732 44195249 ~ 44198478 (-)
G26038 NA non-coding downstream 557911 44054940 ~ 44056299 (-)
G26238 NA non-coding upstream 67607 44683188 ~ 44688822 (-)
G26240 NA non-coding upstream 82830 44698411 ~ 44698915 (-)
G26278 NA non-coding upstream 237487 44853068 ~ 44853571 (-)
G26290 NA non-coding upstream 246603 44862184 ~ 44865066 (-)
LOC111197337 NA non-coding upstream 496957 45112538 ~ 45113961 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other downstream 714450 43890629 ~ 43899760 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other downstream 935348 43675025 ~ 43678862 (-)
LOC103027084 LOC108416115,LOC103358919 other downstream 1097053 43495419 ~ 43517157 (-)
G25785 NA other downstream 1502809 43098822 ~ 43111401 (-)
G25678 NA other downstream 1895821 42717666 ~ 42718389 (-)
fkbp1b fkbp1b other upstream 153683 44769264 ~ 44799505 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other upstream 240518 44856099 ~ 44870690 (-)
G26295 atad2b,LOC107697175,LOC107603081 other upstream 267197 44882778 ~ 44885801 (-)
G26388 NA other upstream 820528 45436109 ~ 45437585 (-)
G26588 NA other upstream 1319572 45935153 ~ 45935622 (-)

Expression


Co-expression Network