trnac-gca_8


Basic Information

Item Value
gene id trnac-gca_8
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52468772 ~ 52468843 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnac-gca_8
GGCTCCGTAGCTCAGTGGATAGAGCGCTGGTCTGCAAAACCAGAGGTTTGAGTTCGATCTTCACTGGAGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnac-gca_8 True 72 tRNA 0.54 1 52468772 52468843

Neighbor

gene id symbol gene type direction distance location
LOC103030894 NA coding upstream 56692 52403882 ~ 52412080 (+)
ddhd1 NA coding upstream 67954 52382945 ~ 52400818 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 coding upstream 94625 52367883 ~ 52374147 (+)
LOC103029411 NA coding upstream 140970 52321992 ~ 52327802 (+)
tmx3 tmx3 coding upstream 773755 51586207 ~ 51695017 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding downstream 106095 52574938 ~ 52609821 (+)
LOC111188745 NA coding downstream 300399 52769242 ~ 52781864 (+)
LOC103033541 LOC108413844,LOC108417958 coding downstream 316816 52785659 ~ 52789369 (+)
LOC111188773 LOC108417958 coding downstream 342210 52811053 ~ 52816494 (+)
LOC103041583 LOC108417958 coding downstream 356341 52825184 ~ 52829284 (+)
G27716 NA non-coding upstream 87767 52379856 ~ 52381005 (+)
LOC111188740 NA non-coding upstream 104600 52362005 ~ 52364172 (+)
G27701 NA non-coding upstream 120516 52342948 ~ 52348256 (+)
G27684 NA non-coding upstream 153277 52315112 ~ 52315495 (+)
G27682 NA non-coding upstream 155538 52313035 ~ 52313234 (+)
G27763 meis1,LOC103032373,LOC100690952,LOC106953003,LOC102195920 non-coding downstream 59885 52528728 ~ 52531000 (+)
G27772 NA non-coding downstream 135103 52603946 ~ 52693356 (+)
G27775 c25h14orf132,LOC108413331,LOC105892943,LOC107549545,LOC107582175 non-coding downstream 198492 52667335 ~ 52672114 (+)
G27834 NA non-coding downstream 435477 52904320 ~ 52904678 (+)
G27849 NA non-coding downstream 560966 53029809 ~ 53030010 (+)
G27729 LOC103457336,LOC100194557,LOC103359577 other upstream 12608 52454431 ~ 52456164 (+)
G27683 LOC108412685 other upstream 154506 52314025 ~ 52314266 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other upstream 378139 52083282 ~ 52090633 (+)
G27489 NA other upstream 1290398 51174488 ~ 51178374 (+)
lyrm2 lyrm2 other upstream 1696610 50769863 ~ 50772162 (+)
LOC111188765 glrx5,LOC106571612 other downstream 291270 52760113 ~ 52768976 (+)
trnah-gug NA other downstream 1153980 53622823 ~ 53622894 (+)
trnae-uuc_2 NA other downstream 1154339 53623182 ~ 53623253 (+)
trnar-acg NA other downstream 1154606 53623449 ~ 53623521 (+)
trnam-cau_5 NA other downstream 1154774 53623617 ~ 53623689 (+)

Expression


Co-expression Network