CI01000010_00691767_00731442 (MAGIXA, MAGIX)


Basic Information

Item Value
gene id CI01000010_00691767_00731442
gene name MAGIXA, MAGIX
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 691767 ~ 731442 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_00691767_00731442.mRNA
TTTTTGAGGTGACTCTCACCGCTGTTTCTCCAAAGCTCCAGGCAGAGTCCATAAGACCTGGAGTTATAACTTTCTCTCTCTCTGTGAGCGCTGTCAACATGTCTAAGGCCACTGTTAAGAAGCTGCACTGGCGCTCGAAAGTGCAGGAGAGCTTCGTCCCACTGGGCGGAGCCTCGGGAGAGCTTGGTGTGGCCATTGGAGGTGGTGCAGATTATGGAGAGTTCCCATTTGTTACAGCAGCACCTGGGGGTGGAGCCACTGTTGGTGACATCATCCTAGAGATTGGGGGTACGCCTGTCCTGGGATTGACCTTGGGAGATGTAAGAGGGGTTCTGAACTCATGTCCACATCCCATTCGGATAAAAACTGTCTTACCAGGCTCGACTCTCTGTAAGGATCTGAGACTTTACCTGAGCAAGTGTTTTACACCCGGATCAATGGACAGCCAACTCCAACAGGTCATACGAGAGAACCTCTACCTGCGCGCCGTGCCCTGTACAACCAGGCAACCACGGGATGGAGAGATCTCAGGGGTGGATTATAACTTTGTGTCCATTGAGGAATTCTTCTCCCTGGAAGAGTCTGGAGCCCTGCTGGAAAGTGGGAAGTTCAAAGGTAACTATTATGGCACTCCTCGGCCGGTCCACATCGGTCCTGACAGCCCACCCATTACGTACCAGGAACATCGAAACCTCCTGAGAAACTTTCGTACCCGCAGCAAATCGCTCAGCAACCTGGAAAAGGCAGTGGAGGAAGGTGACAACAGCGAGGAAGACTCTGGTCTATCAGCGGGGTCTGCAGGAGCCAGCAGTGCCCCTCCCACCACCATTGTCTCACCTAATCAGACTTGGGACTCAGGCGGTGGGCGGGATGGAGGGGTTGCCATGGAGAACGGAGCACGTGGAGGGGCTTTGCCTGAAAACTGGGAGCTGGCGTTCAGTGACACAGGCGAACCCTATTACATCAACCATAACTCAAAGACCACAAGCTGGCTGGACCCAAGGACTCAGGGCAAAGAAATTGTCAGCAAGACGGAGTGGCCTCGTGGGTTTGGCTTCAACATTGTGGGTGGCAGTAGACCTCGGGAATTCCTGCAGGTGTACAGCGTCACCCCAGGAGGCCCGTCTGCACTCAAAACAGCGGATATCCTGGTGTACATTAATGACTCGTGTGTGCTGGGTCTGTCCCATAAAGAAGTGGTAGAAATGCTGAAATCCGTCCCCATGGGTCACAGTGTGGATGTGGTTCTTCGCCGAGGTTACCCCATGCTCTACAACCCTGATGGCTGCCCCAAAACCAGCCTCTCTTCCCCTTCTGACCCAACCAGTGCCAACCCTGCAGCACCCAGTTCTGCTCAATCCCAGGTTCAACATCCTGATGGACACCAACCTGGCTTGGTGAACCTCAATCGCTCCATGTCCCACCACAACAACTTCTACCCCCGCATGCAGAAAGAATCCTTGGATGCTAACGGGAACACAGCACCCCAGCCTTCCTACTCAATGGTCAATGGAAATGGAGTGGGAGGGACTATAGGACTGGGGGCGCTGCCTTCATCAAATGCCCCTCCCCTATCAGAGCGAATGAGCTCTAGTCACAGCGATACGGAGGTCAGCTCTGTTGTCACGCGCAGAGCTTCCCTTGTCCGAAGCTACAACAACAACACTCTTCCAGCTCCTTCTCACGCCCATCATAGTTCCAAGTCTTCCGAGAGCGATCTCTCCTCTGCAACGCTCCCCCTGCCTCAGCCCGAGGTGGGTCCTACCGCCCCGCCACCAGGAGCACCTAGCACCCAGCGGCCTCCCATGCCCCAAACATCTCTTGCCGTCGCACCCCCAACCGAGCACCCACCCTGTGGTTTCAACGGGTGTCCAGCCAACAATCCCCCGCGACCTCTTCCGGGTGGCCTAGGGTCCCCCGGAGCCCCAGGTGGGGTAGGCTGCGGAGGAGGGGGTGAGCTGGTACCTGTGGCCTTGGGCAGGAGCGAGGGAGGGGGTATGGGTTTCAGTGTGACGGCTGGGGGGCAAGGAGGGCAGCTGGCGGTGGTGAAGAGAGTCTGGGACAGACGACAGTGCCCCTCCTTACAGCCAGGGGATGCCATTATTAAAATCAATGGCGCTGATGTGCAGAGCCTCAGCTTCGCACAGGTGCAGCGGGTGCTGCAAGAACATACCAAACAGGGTGAGGTGGTCTTACTGGTTTACAGAGGAGGTCCTCTTTGCTCCCCAGGCTCTCCAAATGCCTATAAAAGACCTCCTCCCTCCCTGGGCACTCCAGATCTGACCTCGCCCTCCTCCGATGGTGCTGTGCCTAGCCAGAGCACCCTTTCTCCCTCCTCCCCCTGCGGTGACCTCCCCAACCTGGTCCAAAGCACCAGCTTCCTGGACTCGGTGCCCGTGACCCTGACCCTAGAGCCCCGGGACTGGTTAGGGGTTGAGGACGGACCTGCTCAGTGGACCCGTACTGCTGCTTCTAACCTCGGCGCAGTATCCAAAAGCCATGTAGACGCGAGGGGAGTGGTCTCTTCCAGAGCGATGGAGGTGGAGTTGAGACGGAGACCAGGAGAGGGATTCGGGTTTGTCATCGCATCACAGGATGTAGTGAATGGAACACGCAAAACCTCTGTTCTTCCTGCCGAACCCTGTGGTGTGTGTAAAACTCGGCTCTCATATGGCTCATTGGCTCGCAGTTCAGAGGAAATCTGCCCAGACGTGAAAATAACAGAGGCTCATAAGTGGAGTCGACTGTCTCTGTGTAACATGATGGCGAGTGCTCAGGCCTCGTCTCTAGTGTCTCACAGGTTTGTGACGGTGCGACGGGGGAGTCCAGCAGCACGCAGTGGTCAGATCCAGCCGGGGGATCAGTTGGAGGCCGTGGAGGGCAGATCAGTGGTCACGCTGCCTCACAGAGACCTCGCACAGATACTGCGCAGAGCTGGAAACACACTCAGACTCACCATTATACCACGCTCTCACACTAACAATAATCTGCCTGAATACCCTGACTTTGATGCCGAGAGCCGGTTAAGAAAAGGGCACCGGGCCAAGCAAAAGGATTCCCAATTTTATAGCGTTGATCTGGAGAGGGGCCCAACAGGGTTTGGTTTTAGTTTGCGAGGTGGAAGCGAGTATAACATGGGTCTGTATGTACTTGGTCTAATGGAGGGTGGACCGGCTTCACGGAGTCAGAAAATTCAGGTGAGTGATCAGCTGGTGGAGATCAATGGAGACAGCACAGCCGGGATGACACACAGCCAGGCCGTGGAGCAGATCCGAAAGGGAGGAGCATGGATACACCTTGTACTGAAGAAAGGCAACGGATATGTACCAGATTATGGAAGAAGAGAGCAACAGATGCGTTCGCGGAGTTTACCTGGCACGTTGAGGGGCCAAGAGAGTCCACGGAAAGAAGAGGTGGAGGACGGCACATGGGGGGAAAGGAAGGGAGAGGGGGAACGACGAAGGGGAAGGCAGAAAAGCAAGAGCATGGGGGAGAGAAGACGAAAAGTGAAGGATGTTAGTTCAGAAAGAGAAAACGATCTCCCAGAGAGGGAGAAAGAGAGTGTCGGAAGAGAAAAGAGGGATAACAACAGAACCAGCACAACGGAGGTCACACAGCGCGCACCTTTCTCCTTCCTCATGCCTTTGGACAATGACGATGATGGGTCAGGTGCAGAATCGGCTCACAGCTTCTCTGAAGTCAGCGTGTCTGCAGCCAGCATCGCATTCTCGACTCAGTGGCCTCTGGATCCCATCCGCCCTCTACAGGCCCCTGGATCTTCGACAACACCTCCGGGACCCTGGCTTGTCCCCAGCCCTCACAAACTCTCTCAGGTTTTAGAGGGGAAAAGGCTGAGCCAGAATAAGGGAGGACTGTGGTCCTAA

Function

symbol description
magixa Predicted to be involved in signal transduction. Predicted to be located in cell junction and membrane. Predicted to be active in cell-cell junction and cytoplasm. Orthologous to human MAGIX (MAGI family member, X-linked).
magix Orthologous to human MAGIX (MAGI family member, X-linked).

NR:

description
novel protein containing a WW domain and PDZ domains (Also known as DHR or GLGF), partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_00691767_00731442.mRNA True 3884 mRNA 0.56 19 691767 731442

Neighbor

gene id symbol gene type direction distance location
CI01000010_00653231_00678240 NA coding downstream 12074 653185 ~ 679693 (-)
CI01000010_00601570_00615159 IQSEC2 coding downstream 76608 601570 ~ 615159 (-)
CI01000010_00553512_00562038 NA coding downstream 129729 553413 ~ 562038 (-)
CI01000010_00532752_00544586 CSDE1 coding downstream 147181 532617 ~ 544586 (-)
CI01000010_00524503_00527976 APEX2 coding downstream 163791 524399 ~ 527976 (-)
CI01000010_00810923_00813645 NA coding upstream 79005 810447 ~ 813870 (-)
CI01000010_00861290_00870510 NA coding upstream 129038 860480 ~ 871146 (-)
CI01000010_00902754_00903080 NA coding upstream 171075 902517 ~ 903230 (-)
CI01000010_00929453_00930078 NA coding upstream 197619 929061 ~ 930537 (-)
CI01000010_00952202_00958971 PTK6 coding upstream 220450 951892 ~ 959383 (-)
G61043 NA non-coding downstream 95082 596126 ~ 596685 (-)
G61055 NA non-coding downstream 106680 584816 ~ 585087 (-)
G61051 NA non-coding downstream 112001 579044 ~ 579766 (-)
G61050 NA non-coding downstream 112819 578669 ~ 578948 (-)
G61035 NA non-coding downstream 126939 564608 ~ 564828 (-)
G61075 NA non-coding upstream 49365 780807 ~ 783522 (-)
G61098 NA non-coding upstream 57753 789195 ~ 789490 (-)
G61104 NA non-coding upstream 72753 804195 ~ 804412 (-)
G61105 NA non-coding upstream 73628 805070 ~ 805362 (-)
G61115 NA non-coding upstream 107020 838462 ~ 840123 (-)
G61045 NA other downstream 116256 572753 ~ 575511 (-)
G61888 NA other upstream 513027 1244469 ~ 1246018 (-)
G61965 NA other upstream 692983 1424425 ~ 1545051 (-)
CI01000010_03527436_03530341 NA other upstream 2798228 3527408 ~ 3530359 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other upstream 3158627 3890069 ~ 3899058 (-)
G64237 NA other upstream 3498508 4229950 ~ 4236416 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009724 LOC108265805,LOC108437579 coding CM030126.1 CM030126.1 45057674 ~ 45087487 (-)