trnam-cau_1


Basic Information

Item Value
gene id trnam-cau_1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 12290156 ~ 12290228 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnam-cau_1
GCCTCGTTGGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACACGGGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnam-cau_1 True 73 tRNA 0.57 1 12290156 12290228

Neighbor

gene id symbol gene type direction distance location
trnam-cau NA coding downstream 401 12289683 ~ 12289755 (-)
doc2b doc2b,LOC108428416,LOC108260357,LOC107681901,LOC107685552,LOC107587692 coding downstream 125972 11987426 ~ 12164184 (-)
castor2 gatsl2,LOC107685562,LOC107595468,LOC107587690,LOC107681899 coding downstream 333719 11919468 ~ 11956437 (-)
polr2j polr2j,LOC107587688,LOC107595521 coding downstream 437313 11849703 ~ 11852843 (-)
alkbh4 alkbh4 coding downstream 442406 11844780 ~ 11847750 (-)
trnam-cau_2 NA coding upstream 631 12290859 ~ 12290931 (-)
trnam-cau_4 NA coding upstream 1639 12291867 ~ 12291939 (-)
LOC103036635 LOC108437067 coding upstream 236197 12526425 ~ 12529331 (-)
LOC111191990 NA coding upstream 315399 12605627 ~ 12622756 (-)
LOC103022019 arhgap35,LOC108437035,LOC108260288,LOC107596120,LOC105901059,LOC107663410,LOC107734134 coding upstream 499423 12789651 ~ 12809411 (-)
G18164 NA non-coding downstream 63767 12225809 ~ 12226389 (-)
G18154 NA non-coding downstream 154418 12135420 ~ 12135738 (-)
LOC103023588 NA non-coding downstream 319438 11964024 ~ 11970718 (-)
G18114 NA non-coding downstream 410114 11879752 ~ 11880042 (-)
G18087 NA non-coding downstream 503555 11786232 ~ 11786601 (-)
G18212 NA non-coding upstream 8323 12298551 ~ 12315182 (-)
G18221 LOC108437058,LOC106603118 non-coding upstream 108319 12398547 ~ 12448924 (-)
G18232 LOC108437058,LOC108259843 non-coding upstream 138203 12428431 ~ 12429308 (-)
G18228 LOC108437058,LOC108259843 non-coding upstream 145286 12435514 ~ 12436971 (-)
G18236 LOC108437058 non-coding upstream 147454 12437682 ~ 12439732 (-)
orai2 LOC103026696,LOC108428392,LOC107685638,LOC107595471 other downstream 494005 11781512 ~ 11796151 (-)
G18037 NA other downstream 604765 11684987 ~ 11685391 (-)
LOC103044489 LOC103044489,LOC108428292 other downstream 694633 11435436 ~ 11595523 (-)
abr abr,si:ch211-253h3.1,LOC107665039,LOC107712163,LOC107688618,LOC107731041,LOC103375456,LOC106567975 other downstream 955638 11085480 ~ 11334518 (-)
LOC107197924 NA other downstream 1206357 11076238 ~ 11083799 (-)
LOC111191510 LOC108414110,LOC108437066,LOC108442041,LOC108437065 other upstream 476871 12767099 ~ 12780581 (-)
fxyd2 NA other upstream 520948 12811176 ~ 12816601 (-)
G18371 tagln,tagl,LOC108437045,LOC103026775,LOC108437046,LOC107749469,LOC107700246,LOC107548469,LOC107746372,LOC107710578 other upstream 645073 12935301 ~ 13007435 (-)
LOC107197939 NA other upstream 844489 13134717 ~ 13143478 (-)
LOC107197937 LOC107197937 other upstream 854545 13144773 ~ 13161124 (-)

Expression


Co-expression Network