trnam-cau_6


Basic Information

Item Value
gene id trnam-cau_6
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53624862 ~ 53624934 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnam-cau_6
GCCTCGTTAGCGCAGTAGGTAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGATCCTCACACGGGGca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnam-cau_6 True 73 tRNA 0.60 1 53624862 53624934

Neighbor

gene id symbol gene type direction distance location
LOC103041583 LOC108417958 coding upstream 795578 52825184 ~ 52829284 (+)
LOC111188773 LOC108417958 coding upstream 808368 52811053 ~ 52816494 (+)
LOC103033541 LOC108413844,LOC108417958 coding upstream 835493 52785659 ~ 52789369 (+)
LOC111188745 NA coding upstream 842998 52769242 ~ 52781864 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding upstream 1015041 52574938 ~ 52609821 (+)
epb41l2 epb41l2,LOC107560489,LOC106571359,LOC100380760 coding downstream 338628 53963562 ~ 54049416 (+)
scara5 scara5,LOC104952888 coding downstream 642450 54267384 ~ 54399891 (+)
LOC103031746 NA coding downstream 808789 54433723 ~ 54455524 (+)
LOC103038902 gopc,LOC107743304,LOC107727658,LOC107697149 coding downstream 1040474 54665408 ~ 54689752 (+)
tdrd15 NA coding downstream 1202690 54827624 ~ 54843995 (+)
G27935 NA non-coding upstream 10855 53613777 ~ 53614007 (+)
G27923 NA non-coding upstream 47664 53576776 ~ 53577198 (+)
G27917 NA non-coding upstream 89637 53534600 ~ 53535225 (+)
G27903 NA non-coding upstream 120438 53499475 ~ 53504424 (+)
G27875 NA non-coding upstream 294085 53327872 ~ 53330777 (+)
G27962 NA non-coding downstream 49654 53674588 ~ 53675007 (+)
G27964 NA non-coding downstream 62765 53687699 ~ 53689734 (+)
G27966 med23 non-coding downstream 66792 53691726 ~ 53693741 (+)
G27972 med23 non-coding downstream 71016 53695950 ~ 53696768 (+)
G27984 med23 non-coding downstream 88831 53713765 ~ 53715952 (+)
trnar-acg_1 NA other upstream 96 53624694 ~ 53624766 (+)
trnae-uuc_3 NA other upstream 364 53624427 ~ 53624498 (+)
trnah-gug_1 NA other upstream 723 53624068 ~ 53624139 (+)
trnam-cau_5 NA other upstream 1173 53623617 ~ 53623689 (+)
trnar-acg NA other upstream 1341 53623449 ~ 53623521 (+)
trnah-gug_2 NA other downstream 379 53625313 ~ 53625384 (+)
trnae-uuc_4 NA other downstream 738 53625672 ~ 53625743 (+)
trnar-acg_2 NA other downstream 1005 53625939 ~ 53626011 (+)
trnam-cau_7 NA other downstream 1173 53626107 ~ 53626179 (+)
trnah-gug_3 NA other downstream 1624 53626558 ~ 53626629 (+)

Expression


Co-expression Network