trnas-cga_5


Basic Information

Item Value
gene id trnas-cga_5
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53649774 ~ 53649855 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnas-cga_5
GTAGTtgtggccgagtggttaaggcgatggacTCGAAATCCATTGGGGTCTCCCcgcgcaggttcgaatcctgccGACTACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnas-cga_5 True 82 tRNA 0.64 1 53649774 53649855

Neighbor

gene id symbol gene type direction distance location
LOC103041583 LOC108417958 coding upstream 820490 52825184 ~ 52829284 (+)
LOC111188773 LOC108417958 coding upstream 833280 52811053 ~ 52816494 (+)
LOC103033541 LOC108413844,LOC108417958 coding upstream 860405 52785659 ~ 52789369 (+)
LOC111188745 NA coding upstream 867910 52769242 ~ 52781864 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding upstream 1039953 52574938 ~ 52609821 (+)
epb41l2 epb41l2,LOC107560489,LOC106571359,LOC100380760 coding downstream 313707 53963562 ~ 54049416 (+)
scara5 scara5,LOC104952888 coding downstream 617529 54267384 ~ 54399891 (+)
LOC103031746 NA coding downstream 783868 54433723 ~ 54455524 (+)
LOC103038902 gopc,LOC107743304,LOC107727658,LOC107697149 coding downstream 1015553 54665408 ~ 54689752 (+)
tdrd15 NA coding downstream 1177769 54827624 ~ 54843995 (+)
G27935 NA non-coding upstream 35767 53613777 ~ 53614007 (+)
G27923 NA non-coding upstream 72576 53576776 ~ 53577198 (+)
G27917 NA non-coding upstream 114549 53534600 ~ 53535225 (+)
G27903 NA non-coding upstream 145350 53499475 ~ 53504424 (+)
G27875 NA non-coding upstream 318997 53327872 ~ 53330777 (+)
G27962 NA non-coding downstream 24733 53674588 ~ 53675007 (+)
G27964 NA non-coding downstream 37844 53687699 ~ 53689734 (+)
G27966 med23 non-coding downstream 41871 53691726 ~ 53693741 (+)
G27972 med23 non-coding downstream 46095 53695950 ~ 53696768 (+)
G27984 med23 non-coding downstream 63910 53713765 ~ 53715952 (+)
trnas-cga_4 NA other upstream 104 53649589 ~ 53649670 (+)
trnal-cag_2 NA other upstream 638 53649054 ~ 53649136 (+)
trnal-cag_1 NA other upstream 1014 53648678 ~ 53648760 (+)
trnas-uga_7 NA other upstream 1205 53648488 ~ 53648569 (+)
trnas-cga_3 NA other upstream 1391 53648302 ~ 53648383 (+)
trnal-cag_3 NA other downstream 108 53649963 ~ 53650045 (+)
trnal-cag_4 NA other downstream 483 53650338 ~ 53650420 (+)
trnal-cag_5 NA other downstream 858 53650713 ~ 53650795 (+)
trnas-uga_8 NA other downstream 1025 53650880 ~ 53650961 (+)
trnas-aga_6 NA other downstream 1211 53651066 ~ 53651147 (+)

Expression


Co-expression Network