trnas-uga_6


Basic Information

Item Value
gene id trnas-uga_6
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53646791 ~ 53646872 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnas-uga_6
GTAGtcgtggccgagtggttaaggcgatggacTTGAAATCCATTGGGGTTTCCCCGCGCAGGTTCGAACCCTGCCGACTACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnas-uga_6 True 82 tRNA 0.59 1 53646791 53646872

Neighbor

gene id symbol gene type direction distance location
LOC103041583 LOC108417958 coding upstream 817507 52825184 ~ 52829284 (+)
LOC111188773 LOC108417958 coding upstream 830297 52811053 ~ 52816494 (+)
LOC103033541 LOC108413844,LOC108417958 coding upstream 857422 52785659 ~ 52789369 (+)
LOC111188745 NA coding upstream 864927 52769242 ~ 52781864 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding upstream 1036970 52574938 ~ 52609821 (+)
epb41l2 epb41l2,LOC107560489,LOC106571359,LOC100380760 coding downstream 316690 53963562 ~ 54049416 (+)
scara5 scara5,LOC104952888 coding downstream 620512 54267384 ~ 54399891 (+)
LOC103031746 NA coding downstream 786851 54433723 ~ 54455524 (+)
LOC103038902 gopc,LOC107743304,LOC107727658,LOC107697149 coding downstream 1018536 54665408 ~ 54689752 (+)
tdrd15 NA coding downstream 1180752 54827624 ~ 54843995 (+)
G27935 NA non-coding upstream 32784 53613777 ~ 53614007 (+)
G27923 NA non-coding upstream 69593 53576776 ~ 53577198 (+)
G27917 NA non-coding upstream 111566 53534600 ~ 53535225 (+)
G27903 NA non-coding upstream 142367 53499475 ~ 53504424 (+)
G27875 NA non-coding upstream 316014 53327872 ~ 53330777 (+)
G27962 NA non-coding downstream 27716 53674588 ~ 53675007 (+)
G27964 NA non-coding downstream 40827 53687699 ~ 53689734 (+)
G27966 med23 non-coding downstream 44854 53691726 ~ 53693741 (+)
G27972 med23 non-coding downstream 49078 53695950 ~ 53696768 (+)
G27984 med23 non-coding downstream 66893 53713765 ~ 53715952 (+)
trnas-uga_5 NA other upstream 711 53645999 ~ 53646080 (+)
trnas-aga_5 NA other upstream 1503 53645207 ~ 53645288 (+)
trnas-uga_4 NA other upstream 2295 53644415 ~ 53644496 (+)
trnas-aga_4 NA other upstream 2631 53644079 ~ 53644160 (+)
trnas-uga_3 NA other upstream 2909 53643801 ~ 53643882 (+)
trnas-cga NA other downstream 384 53647256 ~ 53647337 (+)
trnas-cga_1 NA other downstream 734 53647606 ~ 53647687 (+)
trnas-cga_2 NA other downstream 1081 53647953 ~ 53648034 (+)
trnas-cga_3 NA other downstream 1430 53648302 ~ 53648383 (+)
trnas-uga_7 NA other downstream 1616 53648488 ~ 53648569 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnay-gua_52 NA coding NC_053127.1 CM020924.1 8751028 ~ 8751113 (+)
tiger barb (Puntius tetrazona) trnas-uga_118 NA coding NC_056702.1 CM032071.1 27079239 ~ 27079320 (+)