CI01000010_00924389_00928340 (DNAJC5)


Basic Information

Item Value
gene id CI01000010_00924389_00928340
gene name DNAJC5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 923961 ~ 928351 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_00924389_00928340.mRNA
TTATATATACAGTATATGCCATATGATTTCAGTTAGACCCCAGATTGACCAAACTACATGGAATATGGAATATGGATTGTATAAAAAATAAAGGGAATTTAAGTAAACTTATGGTGGCTGACTAAAAAAAAGGCTGATAAAGAGAGAGAGTGCAAGAAAAGATCAGTAGATGACCTAAGCAAATCATGAGGATCCGTAATTATTTTTGATTTGTGGTGGTGATGATTATGATGAAGGTCATTTGACATTTGGTCAGTGTCCTCTGTCGTAGATATTGCATTATAAAGTTCCCTAGTGTTTAAATTATACACTTTAATATATGTGCTTTGTATTTTTTTTAAGAATATGACTTTTTTTAAGAGTTTGTAATATTATCATCCAGCAATGTGTGTTTGTGTGTGTTCAGATTGTTGAGGACCTGATTTGCCATGGCTGAGCAGCAGAGGCAGCGCACTCTCTCCACCTCTGGAGAATCACTCTATCATGTTCTGGGTGTCGACAAAGTGGCCACTGTTGATGACATCAAGAAGTCATACAGGAAACTGGCATTGAAATATCATCCTGACAAGAATCCTGACAATCCTGAGGCAGCTGATAAGTTTAAAGAGATAAACAATGCCCATGCCATTCTTAACGACCCAACAAAGAGAAACATCTACGACAAGTATGGCTCTCTGGGACTTTATGTGGCTGAACAGTTTGGAGAAGAGAATGTCAACACTTACTTTGTTCTGTCCAGCTGGTGGGCCAAGGTAAGACTCTGAGTGGCATTTCA

Function

symbol description
dnajc5 Predicted to enable ATP-dependent protein binding activity. Predicted to be involved in synaptic vesicle exocytosis. Predicted to act upstream of or within negative regulation of neuron apoptotic process. Located in Golgi apparatus and plasma membrane. Implicated in neuronal ceroid lipofuscinosis 4B.

GO: NA

KEGG:

id description
K09525 DNAJC5; DnaJ homolog subfamily C member 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_00924389_00928340.mRNA True 775 mRNA 0.38 2 923961 928351

Neighbor

gene id symbol gene type direction distance location
CI01000010_00912846_00919998 NA coding upstream 3734 912846 ~ 920227 (+)
CI01000010_00910595_00911893 MGC83062, GID8, GID8.L, CT011, GID8A, GID8B coding upstream 12015 910595 ~ 911946 (+)
CI01000010_00907286_00907804 NA coding upstream 16080 907062 ~ 907881 (+)
CI01000010_00892258_00898466 YTHDF1 coding upstream 25407 892258 ~ 898554 (+)
CI01000010_00886120_00889930 NA coding upstream 34002 885891 ~ 889959 (+)
CI01000010_00934527_00937510 NA coding downstream 6176 934527 ~ 937976 (+)
CI01000010_00944226_00945123 NA coding downstream 15875 944226 ~ 945178 (+)
CI01000010_00946586_00947327 NA coding downstream 16912 945182 ~ 947577 (+)
CI01000010_01029244_01041878 DNMT3BA coding downstream 100498 1028849 ~ 1042357 (+)
CI01000010_01046137_01048306 MAPRE1A coding downstream 117606 1045957 ~ 1048518 (+)
G60817 NA non-coding upstream 134535 788888 ~ 789426 (+)
G60801 NA non-coding upstream 187952 727837 ~ 736009 (+)
G60780 NA non-coding upstream 245854 673066 ~ 678107 (+)
G60693 NA non-coding upstream 326866 596824 ~ 597095 (+)
G60745 NA non-coding upstream 356029 567603 ~ 567932 (+)
G60852 NA non-coding downstream 20506 948857 ~ 959047 (+)
G60915 NA non-coding downstream 90666 1019017 ~ 1019485 (+)
G61218 NA non-coding downstream 321894 1250245 ~ 1250446 (+)
G61220 NA non-coding downstream 323985 1252336 ~ 1252899 (+)
G61219 NA non-coding downstream 324717 1253068 ~ 1253739 (+)
CI01000010_00881905_00883563 NA other upstream 40447 881195 ~ 883684 (+)
CI01000010_00826648_00831638 NA other upstream 85529 826648 ~ 832705 (+)
CI01000010_03197380_03199958 NA other downstream 2265804 3197380 ~ 3200044 (+)
CI01000010_03320340_03346243 NA other downstream 2385344 3313695 ~ 3347796 (+)
G62838 NA other downstream 2961744 3890095 ~ 3893793 (+)
G62856 NA other downstream 3009406 3937757 ~ 3939945 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035645 dnajc5aa coding NC_007119.7 CM002892.2 23165749 ~ 23179849 (+)
bowfin (Amia calva) G74769 NA non-coding CM030128.1 CM030128.1 40529714 ~ 40530310 (+)
tiger barb (Puntius tetrazona) G63068 dnajc5,dnajc5aa,LOC107678568,LOC107668106,LOC103036084,LOC108412505,LOC100691596 non-coding NC_056706.1 CM032075.1 11543989 ~ 11545449 (-)
mexican tetra (Astyanax mexicanus) G69188 NA non-coding NC_035903.1 CM008306.1 37285324 ~ 37296351 (+)