LOC103023024 (cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722)


Basic Information

Item Value
gene id LOC103023024
gene name cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 539518 ~ 558580 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>NM_001291262.1
ATGGTCGTACATACGATCCACTGGTTCAGGAAGGGCTTGAGGCTCCACGACAATCCTTCCCTCAGAGAGTCGATCCAGGGAGCGGACACTGTGCGCTGCGTCTACATCCTCGACCCCTGGTTTGCGGGATCGTCCAACGTTGGAATCAACAGGTGGAGGTTTTTACTGCAGTGTCTGGAGGATTTGGACGCCAGCCTCCGCAAACTCAACTCTCGTTTGTTTGTTATTCGGGGCCAGCCCACTGATGTCTTCCCCAGGCTCTTCAAGGAGTGGAACATCACTCGGCTGTCTTATGAGTACGACTCCGAGCCATTCGGGAAGGAGCGAGATGCAGCCATTAAGAAGCTGGCCAGTGAGGCAGGCGTGGAGGTGACGGTGCGCATCTCCCACACGCTCTACGATCTGGACAAgaTCATAGAGCTCAATGGAGGTCAGTCTCCGCTCACCTACAAGCGCTTCCAGACTCTCATCAGTAAGATGGAGGCGGTGGAAACTCCGACCGAGGCCATCACAGCGGATGTCATGGGCTCCTGCACTACACCTCTGTCTGATGACCATGATGAGAAGTTTGGGGTGCCCTCCCTGGAGGAGCTTGgTTTTGACACCGAGGGGTTGTCTTCAGCTGTGTGGCCTGGAGGAGAGACTGAAGCCCTCACACGCCTCGAGAGGCATCTGGAgagaaagGCATGGGTGGCCAACTTTGAACGTCCCAGAATGAATGCAAACTCCCTGTTGGCCAGTCCCACTGGCCTCAGCCCCTACCTGAGGTTCGGCTGCCTCTCGTGTCGACTCTTTTACTTCAAGCTCACTGACCTGTACAGAAAGGTGAAGAAGAACAGCTcccctcctctctccctctacgGGCAGCTGCTGTGGAGAGAGTTCTTCTACACAGCTGCCACCAACAATCCTCGCTTTGACAAGATGGAGGGCAATCCCATCTGCGTGCAGATGCCCTGGGATCGCAACCCTGAGGCGCTGGCCAAATGGGCTGAGGGCAGGACAGGCTTCCCCTGGATTGATGCCATCATGACCCAGCTGAGGCAGGAAGGCTGGATCCACCACCTGGCCCGACATGCCGTGGCCTGCTTCCTCACCCGGGGAGATCTGTGGATCAGCTGGGAGGAGGGCATGAAGGTGTTTGAGGAGCTGCTCCTGGATGCAGACTGGAGTGTGAATGCAGGCAGCTGGATGTggctctcctgcagctccttCTTCCAGCAGTTCTTTCACTGCTACTGCCCAGTGGGCTTCGGCCGCCGCACTGATCCCAACGGTGACTACATACGGttttcaggcagcagcagcgggaTGGTGTGTTACAGGCAAGAAACTCAACAAGTACCCGGCCCTGTGATTCAGCAAGGGCGAGGGCTTCACTCCAGCACTCAGACCTCTGGGAAACGTCACAGTGAAGAGTCTGGACCCACAACAGGCTCAAAGGTCCAGAGGCAGTGCAGTACCTAA
>TU82185
TAATGAAGAGaatctttatttattgtagGATTCCAAATGCCTGGTAACCCTCAAGGGGAATGGCACAGTGGGATGATGGTGTACCCTCAAGGAGACACACAGCCCAGCAGCAGCACACAACAacaagggttttcaggcagcagcagcgggaTGGTGTGTTACAGGCAAGAAACTCAACAAGTACCCGGCCCTGTGATTCAGCAAGGGCGAGGGCTTCACTCCAGCACTCAGACCTCTGGGAAACGTCACAGTGAAGAGTCTGGACCCACAACAGGCTCAAAGGTCCAGAGGCAGTGCAGTACCTAAAGAAGGAAGTTCTCAGATGTGGGCGTATTGACCTGGAGCAACTGTAGttcacctgttacacacacacacacgcatttatatacaatgttttatcttttgtttAAAGGGGTCGTGGGTATTAGAAGGAGTGCATGATCCTCCCTGTAAGCACatccacacatttttaaagcagttggactgtataatattataacttGGACTACACCCAAACTGATGCCAGCATCCTAACCAGCTCCggaggaaaaagaaaatatgtggTTCCCTGCCGCACTGTTCCGTCAGTGTTCAGAGAGCGTAATGAGTGTTAGGACTCCTCTTGGGACAGAAACCTTTCTGTATATAAGAATTTGTTGATTTACTCACATACAAATTGTACATATTTGATATTGTATGTGCTTTCTCTATTTCATGTAGTCATAGACCCATTGATATATTTTTGATATAAATAATCATTGTGGATCGACTGtactctgttgttttttttgcatatgtAAACATTAAACAGCATCTGTAGTCTGCCCATTCAGTGCATGGCGAGGCTTCTCTCTGTATGCTTGCTTCTGTCTCCcacactctttcttttctctccctctccctcctcaTCTTTGACTCCTTTTTGTCTCTGTTGTTTCTCCTCTCTGCTCGTCTCGTCTATCAGATCTTCAGTCTCCTCTTATAGTTGTCATCATTGTACGCTAAATTGAAGTGTTCATCACTTTGTGCTTCTTGTCCACTTATGTTGTGctggtttaataaataaagcttaaacATA

Function

symbol description
cry1 Enables double-stranded DNA binding activity; nuclear receptor binding activity; and phosphatase binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleus. Implicated in advanced sleep phase syndrome.

NR:

description
cryptochrome 1a

GO:

id name namespace
GO:0009649 entrainment of circadian clock biological_process
GO:0042542 response to hydrogen peroxide biological_process
GO:0009416 response to light stimulus biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003913 DNA photolyase activity molecular_function
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001291262.1 True 1467 mRNA 0.57 10 539518 557707
TU82185 False 1078 lncRNA 0.43 4 555151 558580

Neighbor

gene id symbol gene type direction distance location
LOC103031583 NA coding upstream 344674 192192 ~ 194844 (+)
braf braf,LOC107725591 coding upstream 360508 148669 ~ 179010 (+)
LOC111192919 NA coding downstream 446 559026 ~ 565310 (+)
LOC103022716 NA coding downstream 11641 570221 ~ 574501 (+)
LOC107197032 NA coding downstream 28113 586693 ~ 590105 (+)
LOC103021355 LOC103021355,LOC108426405,LOC108279735,LOC107757248,LOC107694301,LOC100694258,LOC107590616 coding downstream 55533 614113 ~ 621742 (+)
syt10 syt10,LOC107744086,LOC107656242,LOC107565666,LOC107592193,LOC107658793 coding downstream 191301 749881 ~ 780797 (+)
G60910 NA non-coding upstream 68829 455836 ~ 470689 (+)
G60903 NA non-coding upstream 262196 277010 ~ 277322 (+)
G60983 NA non-coding downstream 58194 616774 ~ 623435 (+)
G60996 NA non-coding downstream 182111 740691 ~ 740898 (+)
G61011 NA non-coding downstream 242069 800649 ~ 800870 (+)
G61016 NA non-coding downstream 275407 833987 ~ 835273 (+)
G61023 NA non-coding downstream 283015 841595 ~ 949084 (+)
mrps33 mrps33,LOC106591474,LOC107694294,LOC107725593 other upstream 392744 144189 ~ 146774 (+)
LOC103045537 NA other downstream 41079 599659 ~ 625009 (+)
G61014 NA other downstream 247985 806565 ~ 1049056 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other downstream 294946 853526 ~ 1043316 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other downstream 887055 1445635 ~ 1481418 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other downstream 1156237 1714817 ~ 1808930 (+)

Expression


Co-expression Network