LOC103045537


Basic Information

Item Value
gene id LOC103045537
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 599659 ~ 625009 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU82226
TGCCTTTAGTCCCCTACCCTCCAGCTGGACTGCAAGGGGTGAAGTGAGGCTGCTCCTCAACCTCCATTCTTTCTCCTTCTCAAACAGCGTGAACAGCACCGGAGATTAGCACAATGTCTGACACTGAGGAGATCGTGGAGGAGTATGAGGAGGAAGTGGAGGAAGAAgttgaggaggaagaggaggaagtaGAAGAAGCCCCTCTGatagaggaggaagaaaaagaacccGAGCAAACGGAAGAAGAAgtggaggaagaagaggaagcagAACCTGAGGATTCCAAACTCAAGTCGAAGCCGTTTATAccaaacatggcgccacccaaATTGCCAGACGGCGAGAAGGTGGACTTCGACGACCTCCATCGCAAACGTGTGGAGAAGGACTTCAACGAGCTGCAGAGTCTCATCGAGCAGCACTTCAGCAACAGGCAGAAGGAGGAGGATGAGCTGATCGCCCTGAAGACGCGAATCGAGCGACGCCGTGCCGACCGTGCCGAACAGCAACGCGTCCGAGCCGAGCAGGAGAGGGAGAGGCAGACCCGGCAGGTGGAGGAAAAAGCCCGGCGAGAGGAGGAGGCCGCCAAACTGAGGGCCGAGGAGGACGCCAAGAAGAAGAAGCTCCTCAACAACAAGAGCCAAACTGA
>XR_001518568.2
GAGCACACCCAGACAACTGCTCACTGCCTTTAGTCCCCTACCCTCCAGCTGGACTGCAAGGGGTGAAGTGAGGCTGCTCCTCAACCTCCATTCTTTCTCCTTCTCAAACAGCGTGAACAGCACCGGAGATTAGCACAATGTCTGACACTGAGGAGATCGTGGAGGAGTATGAGGAGGAAGTGGAGGAAGAAgttgaggaggaagaggaggaagtaGAAGAAGCCCCTCTGatagaggaggaagaaaaagaacccGAGCAAACGGAAGAAGAAgtggaggaagaagaggaagcagAACCTGAGGATTCCAAACTCAAGTCGAAGCCGTTTATAccaaacatggcgccacccaaATTGCCAGACGGCGAGAAGGTGGACTTCGACGACCTCCATCGCAAACGTGTGGAGAAGGACTTCAACGAGCTGCAGAGTCTCATCGAGCAGCACTTCAGCAACAGGCAGAAGGAGGAGGATGAGCTGATCGCCCTGAAGACGCGAATCGAGCGACGCCGTGCCGACCGTGCCGAACAGCAACGCGTCCGAGCCGAGCAGGAGAGGGAGAGGCAGACCCGGCAGGTGGAGGAAAAAGCCCGGCGAGAGGAGGAGGCCGCCAAACTGAGGGCCGAGGAGGACGCCAAGAAGAAGAAGCTCCTCAACAACAAGGTCTACGGCGGCTACATGCAGAAGGTGGATCAGAAGAAGGGCAAGAAGCTAACAGAACGTGAGAAGAAGAACAAGGCCCTTTTGGAGCGCCGCAAGCCCCTCAACATCGACCACCTGAACCAGGACAAGCTGGGCGAGAAGGCCCGAGACCTCTGGCAGTGGCTGAGCCAGCTCCATGCTGAGAAGTTTGATCTGGCCGAGAAACTCAAACAGCAGAAGTACGAAATCAGCGTGCTACGAAACCGTGTCAGCGACCATCAGAGGTACTCCAAAGCCACCAAGACCACCAGGAAGAACTGGAAGTAGACATCActgcttattatttatttgtttttttattcagcttTGAAGAAACTCATCACATTATGTTCAAATAATTCCTTTATCAAGAAAGAATAGCCCTGTCCATTTCGGAGCTCTTCCTCTGGTATCTAATGTGCTCCATGTAGTTTTATTCTactcacataaaaaaatacaaagcttaaagattttatttaaattttctttcaaaaggttttgattttttgtttgtttgtttgtttgttttttttttttcatcatgtgTCACATGTGCAATGGACATTTTCTTCTTTATGTTTTTAGATTATTGCAGTGGTAAATTgcagtgttatccactgtgcctttcatttctatctatctatatagtGTAATGTTGTAACGGCGTGGCAAGGCATGGGCAGTGTTAACTCACCATAACAgacagtacattttaaaattgaatGTTGATATGTACAAGCTTGGACCACTTGAAAATTCCTTTACCCACacctaaactaaaaatctaataaaaagaTTTATGAAAGTATGA

Function

GO:

id name namespace
GO:0006937 regulation of muscle contraction biological_process
GO:0005861 troponin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82226 False 649 TUCP 0.56 2 599683 625009
XR_001518568.2 True 1491 misc_RNA 0.47 1 599659 601149

Neighbor

gene id symbol gene type direction distance location
LOC107197032 NA coding upstream 9554 586693 ~ 590105 (+)
LOC103022716 NA coding upstream 25158 570221 ~ 574501 (+)
LOC111192919 NA coding upstream 34349 559026 ~ 565310 (+)
LOC103031583 NA coding upstream 404815 192192 ~ 194844 (+)
braf braf,LOC107725591 coding upstream 420649 148669 ~ 179010 (+)
syt10 syt10,LOC107744086,LOC107656242,LOC107565666,LOC107592193,LOC107658793 coding downstream 124872 749881 ~ 780797 (+)
LOC111192892 NA coding downstream 184225 809234 ~ 809997 (+)
LOC111192924 NA coding downstream 216028 841037 ~ 844690 (+)
LOC111192895 NA coding downstream 268360 893369 ~ 912312 (+)
LOC111192896 NA coding downstream 287882 912891 ~ 914305 (+)
G60910 NA non-coding upstream 128970 455836 ~ 470689 (+)
G60903 NA non-coding upstream 322337 277010 ~ 277322 (+)
G60996 NA non-coding downstream 115682 740691 ~ 740898 (+)
G61011 NA non-coding downstream 175640 800649 ~ 800870 (+)
G61016 NA non-coding downstream 208978 833987 ~ 835273 (+)
G61023 NA non-coding downstream 216586 841595 ~ 949084 (+)
LOC103039262 NA non-coding downstream 220624 845633 ~ 952485 (+)
LOC103023024 cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722 other upstream 41079 539518 ~ 558580 (+)
mrps33 mrps33,LOC106591474,LOC107694294,LOC107725593 other upstream 452885 144189 ~ 146774 (+)
G61014 NA other downstream 181556 806565 ~ 1049056 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other downstream 228517 853526 ~ 1043316 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other downstream 820626 1445635 ~ 1481418 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other downstream 1089808 1714817 ~ 1808930 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other downstream 1296386 1921395 ~ 1935499 (+)

Expression


Co-expression Network