G60983


Basic Information

Item Value
gene id G60983
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 616774 ~ 623435 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU82239
ttttttgtttATTAAGAACATTCAcaacattttattgattttaaaaccCCTAAAAACAGAGTACAtttgcattcattcattcatttattcattttcactGCTTCACAGGTTAAATGCTTTTAAtgagaatattactgtattccCCTCCCAAATGCACCTGCCATGTACCAAGTGTTCACATTTAGTACTGACTAACACATGCGACGATATGCAAAAGTgtgtatgttaaaatatagcTGATATAAAAGGGAAGTGCTATTTAACCATGCGGTGAAAAGTAAGTGTTTTAAATGTCTTTGGTCATTGTCAGTGGCAgtctttggtttggtttggttttagtttGGCCCTGATCTGATAAATACTGtaacactgtttattatactGCAGATGGTAAAAAgctaataaataacactgttcCTGTGAAATACTTCTGGTCATACTTGCTGATCATTATGAAGGTATTGCACCACAGTATGCTTATAGAATAGTAAGGCTCTCCCCAGGTGGTGCTGTGTATACACCTTTCATGGAAAAACGTCACAACACTGGACTCGGCTACACGGCTTCATCCAGTTATGGAGCAATGAACCAAACTGGTGATGGACAGGCCGGTTCTTCATGCGCTGGACTCATTAGCATCAGATGATATTTCCTTGAAGAGCTCATCCTCCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82239 True 673 lncRNA 0.38 2 616774 623435

Neighbor

gene id symbol gene type direction distance location
LOC107197032 NA coding upstream 26669 586693 ~ 590105 (+)
LOC103022716 NA coding upstream 42273 570221 ~ 574501 (+)
LOC111192919 NA coding upstream 51464 559026 ~ 565310 (+)
LOC103031583 NA coding upstream 421930 192192 ~ 194844 (+)
braf braf,LOC107725591 coding upstream 437764 148669 ~ 179010 (+)
syt10 syt10,LOC107744086,LOC107656242,LOC107565666,LOC107592193,LOC107658793 coding downstream 126446 749881 ~ 780797 (+)
LOC111192892 NA coding downstream 185799 809234 ~ 809997 (+)
LOC111192924 NA coding downstream 217602 841037 ~ 844690 (+)
LOC111192895 NA coding downstream 269934 893369 ~ 912312 (+)
LOC111192896 NA coding downstream 289456 912891 ~ 914305 (+)
G60910 NA non-coding upstream 146085 455836 ~ 470689 (+)
G60903 NA non-coding upstream 339452 277010 ~ 277322 (+)
G60996 NA non-coding downstream 117256 740691 ~ 740898 (+)
G61011 NA non-coding downstream 177214 800649 ~ 800870 (+)
G61016 NA non-coding downstream 210552 833987 ~ 835273 (+)
G61023 NA non-coding downstream 218160 841595 ~ 949084 (+)
LOC103039262 NA non-coding downstream 222198 845633 ~ 952485 (+)
LOC103023024 cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722 other upstream 58194 539518 ~ 558580 (+)
mrps33 mrps33,LOC106591474,LOC107694294,LOC107725593 other upstream 470000 144189 ~ 146774 (+)
G61014 NA other downstream 183130 806565 ~ 1049056 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other downstream 230091 853526 ~ 1043316 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other downstream 822200 1445635 ~ 1481418 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other downstream 1091382 1714817 ~ 1808930 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other downstream 1297960 1921395 ~ 1935499 (+)

Expression


Co-expression Network