G61013 (LOC108444125,LOC108444119,LOC108412201,LOC108262118)


Basic Information

Item Value
gene id G61013
gene name LOC108444125,LOC108444119,LOC108412201,LOC108262118
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 853526 ~ 1043316 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU82277
GGAGAGAGCTGGgtcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagagtggagggtcaggtgtggtcagaggagcttcagtgtagaggaaacgaatctcagattcacttctgtccaaaatcatcttcactcaaacacaactgctcccatgataatgatgtgggactggtgtgtgcagGAGTCCGACTGGTTGGAGGTTCTCACTgctctgggagagtggaggttcttcatggaGAGACCTGGttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtcaggtgtggtcagAGGAGCTTCAGTGTAAAGG
>TU82279
TGttctgggagagtggaggttcttcaaGGAGAGAGCTGGgtcacagtgtgtgatgctgactttaaccagcagggtgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggaggttctgggagcagctgcttttggtagaggggagggtcaggtgtggtcagaggagcttcagtgtagaggaaacgaatctcagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGGCTGGTGTGTGCAGACAGTGTGAGGTTGGTGGATGGTGGAAGTCGCtgtgctgggagagtggaggttcttcatagAGGACAGTGGGG
>TU82280
TGttctgggagagtggaggttcttcaaGGAGAGAGCTGGgtcacagtgtgtgatgctgactttaaccagcagggtgcagagGTTGTGTGgtgagagctgggctgtggttctcttgtggaggttctgggagcagctgcttttggtagagtggagggtcaggtgtggtcagaggagcttcagtgtagaggaaacgaatctcagattcacttctgtccaaaatcatcttcactcaaacacaactgctcccatgataatgatgtgggactggtgtgtgcaggtaaga

Function

NR:

description
PREDICTED: soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82277 True 464 TUCP 0.53 4 1027797 1043316
TU82279 False 350 lncRNA 0.53 3 853526 862242
TU82280 False 283 lncRNA 0.51 3 853526 1033405

Neighbor

gene id symbol gene type direction distance location
LOC111192924 NA coding upstream 8836 841037 ~ 844690 (+)
LOC111192892 NA coding upstream 43529 809234 ~ 809997 (+)
syt10 syt10,LOC107744086,LOC107656242,LOC107565666,LOC107592193,LOC107658793 coding upstream 72729 749881 ~ 780797 (+)
LOC103021355 LOC103021355,LOC108426405,LOC108279735,LOC107757248,LOC107694301,LOC100694258,LOC107590616 coding upstream 231784 614113 ~ 621742 (+)
LOC107197032 NA coding upstream 263421 586693 ~ 590105 (+)
cracr2a NA coding downstream 353882 1397198 ~ 1404499 (+)
LOC103023715 LOC103023715,LOC108436009,LOC108280003,LOC107562295,LOC107560735,LOC107757236,LOC107694310 coding downstream 587557 1630873 ~ 1693966 (+)
ankrd16 ankrd16 coding downstream 768884 1812200 ~ 1825435 (+)
trnay-gua_2 NA coding downstream 769455 1812771 ~ 1812858 (+)
LOC103022887 gdi2,LOC108436005,LOC108279819,LOC107754057 coding downstream 783524 1826840 ~ 1841427 (+)
G61016 NA non-coding upstream 18253 833987 ~ 835273 (+)
G61011 NA non-coding upstream 52656 800649 ~ 800870 (+)
G60996 NA non-coding upstream 112628 740691 ~ 740898 (+)
G60983 NA non-coding upstream 230091 616774 ~ 623435 (+)
G60910 NA non-coding upstream 382837 455836 ~ 470689 (+)
LOC111192923 NA non-coding downstream 4481 1047797 ~ 1049056 (+)
LOC111192863 NA non-coding downstream 6814 1050130 ~ 1051090 (+)
G61085 NA non-coding downstream 462027 1505343 ~ 1505817 (+)
G61100 NA non-coding downstream 565809 1609125 ~ 1621557 (+)
G61131 NA non-coding downstream 715522 1758838 ~ 1761182 (+)
LOC103045537 NA other upstream 228517 599659 ~ 625009 (+)
LOC103023024 cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722 other upstream 294946 539518 ~ 558580 (+)
mrps33 mrps33,LOC106591474,LOC107694294,LOC107725593 other upstream 706752 144189 ~ 146774 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other downstream 402319 1445635 ~ 1481418 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other downstream 671501 1714817 ~ 1808930 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other downstream 878079 1921395 ~ 1935499 (+)
G61575 NA other downstream 2253230 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 4697239 5740555 ~ 5765785 (+)

Expression


Co-expression Network