LOC103039262


Basic Information

Item Value
gene id LOC103039262
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 845633 ~ 952485 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU82325
TATTAATCAAATAATCTTCTTTAAatatctgtgtttttaatttagagGATGCAATAGAAAATTATGATGATGTCATCAGTGGTGATCAGAAGTCTGAAGCTGATGTAACAGGTATGATTATAATGTAACAGTACTGTAATCTCCAGTATGAACACAGTCACTGATGATACTGATGCTGATTTAATGACATTTATCTCTACATTCTGACAGAAGGCGTGTCAGATAACTATGATGATGCTGTTCCCACTGAACCAAACTCCACCATTATGACCATGGATGCACCAGAGGACTATGATGATGCTGTCGCTGCTGAAGAGGATAAAGGAGGGGTAAAAGATTATGAAGATGTGGAGGAGGAGCCTCAGACAGAGATGAATCAtgtgactgagagaccacaccCACTGTCTTTTCTCAGTAAATTAAAATCCAACCTCTTAAGGCACAACAAATAACTGATCATACTACCAATATTACCAATGTTTTGCTTTACACATCTGAAACAGTATCAGGGCTTTAACATACATTGTGTTTAAAG
>TU82327
TATTAATCAAATAATCTTCTTTAAatatctgtgtttttaatttagagGATGCAATAGAAAATTATGATGATGTCATCAGTGGTGATCAGAAGTCTGAAGCTGATGTAACAGGCGTGTCAGATAACTATGATGATGCTGTTCCCACTGAACCAAACTCCACCATTATGACCATGGATGCACCAGAGGACTATGATGATGCTGTCGCTGCTGAAGAGGATAAAGGAGGGGTAAAAGATTATGAAGATGTGGAGGAGGAGCCTCAGACAGAGATGAATCAtgtgactgagagaccacaccCACTGTCTTTTCTCAGTAAATTAAAATCCAACCTCTTAAGGCACAACAAATAACTGATCATACTACCAATATTACCAATGTTTTGCTTTACACATCTGAAACAGTATCAGGGCTTTAACATACATTGTGTTTAAAG
>XR_002650171.1
CGAAAATAAGAAAcccaaaaaattacaatagcagataaataaaaatgctatgaACTACAGATATTAATCAAATAATCTTCTTTAAatatctgtgtttttaatttagagGATGCAATAGAAAATTATGATGATGTCATCAGTGGTGATCAGAAGTCTGAAGCTGATGTAACAGAAGGCGTGTCAGATAACTATGATGATGCTGTTCCCACTGAACCAAACTCCACCATTATGACCATGGATGCACCAGAGGACTATGATGATGCTGTCGCTGCTGAAGAGGATAAAGGAGGGGTAAAAGATTATGAAGATGTGGAGGAGGAGCCTCAGACAGAGATGAATCAtgtgactgagagaccacaccCACTGTCTTTTCTCAGTAAATTAAAATCCAACCTCTTAAGGCACAACAAATAACTGATCATACTACCAATATTACCAATGTTTTGCTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82325 True 535 lncRNA 0.37 4 845694 952485
TU82327 False 433 lncRNA 0.38 5 845694 952485
XR_002650171.1 False 451 lncRNA 0.37 4 845633 846513

Neighbor

gene id symbol gene type direction distance location
LOC111192924 NA coding upstream 943 841037 ~ 844690 (+)
LOC111192892 NA coding upstream 35636 809234 ~ 809997 (+)
syt10 syt10,LOC107744086,LOC107656242,LOC107565666,LOC107592193,LOC107658793 coding upstream 64836 749881 ~ 780797 (+)
LOC103021355 LOC103021355,LOC108426405,LOC108279735,LOC107757248,LOC107694301,LOC100694258,LOC107590616 coding upstream 223891 614113 ~ 621742 (+)
LOC107197032 NA coding upstream 255528 586693 ~ 590105 (+)
LOC111192900 NA coding downstream 48402 1000887 ~ 1007827 (+)
cracr2a NA coding downstream 444713 1397198 ~ 1404499 (+)
LOC103023715 LOC103023715,LOC108436009,LOC108280003,LOC107562295,LOC107560735,LOC107757236,LOC107694310 coding downstream 678388 1630873 ~ 1693966 (+)
ankrd16 ankrd16 coding downstream 859715 1812200 ~ 1825435 (+)
trnay-gua_2 NA coding downstream 860286 1812771 ~ 1812858 (+)
G61016 NA non-coding upstream 10360 833987 ~ 835273 (+)
G61011 NA non-coding upstream 44763 800649 ~ 800870 (+)
G60996 NA non-coding upstream 104735 740691 ~ 740898 (+)
G60983 NA non-coding upstream 222198 616774 ~ 623435 (+)
G60910 NA non-coding upstream 374944 455836 ~ 470689 (+)
LOC111192923 NA non-coding downstream 95312 1047797 ~ 1049056 (+)
LOC111192863 NA non-coding downstream 97645 1050130 ~ 1051090 (+)
G61085 NA non-coding downstream 552858 1505343 ~ 1505817 (+)
G61100 NA non-coding downstream 656640 1609125 ~ 1621557 (+)
G61131 NA non-coding downstream 806353 1758838 ~ 1761182 (+)
LOC103045537 NA other upstream 220624 599659 ~ 625009 (+)
LOC103023024 cry1,LOC103023024,LOC108426403,LOC108279922,LOC105900698,LOC107560722 other upstream 287053 539518 ~ 558580 (+)
mrps33 mrps33,LOC106591474,LOC107694294,LOC107725593 other upstream 698859 144189 ~ 146774 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other downstream 493150 1445635 ~ 1481418 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other downstream 762332 1714817 ~ 1808930 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other downstream 968910 1921395 ~ 1935499 (+)
G61575 NA other downstream 2344061 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 4788070 5740555 ~ 5765785 (+)

Expression


Co-expression Network