G61251 (mkrn1)



Basic Information


Item Value
gene id G61251
gene name mkrn1
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 1984478 ~ 1993858 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU82685
CCCACAGTAGGGCTGGCCAGGCACAAACTCGGCGGCATTGACCCAGTCCACTGCCCCGGAGCTGTGGGGCCTTTCCTGGGCATCGCTTGTGCCACCTGGCCCACTGGGCACGGAGTCAGGGGCACCAGCAACGGCAAGGAGGGCAGCGGGAAGCGGCGCAGAAGGCATGGAGCCAGGGAGTTCCTCTTGCTTGGCTGGTTTGGTGTGTTCATACCTGCAACGATCACCAAACGCACAGCAACCTTTCTGAAAGAATTTGCAGATCATGGCTGGCTTGCTGCTGCTTTGATCATGAGAGTATCGACAGTTGTCCCCCTCTTTGCAAAGACCATGCATGAAATACCTGCAAGTTACGTGCTTCGTCCAGCCTCCCGCCGTTGTTGGAGCCGCTGTAGGTGCCGCCGCTGCCTCCGCCATTGCTGTTTATGTTGAAGCCCAGCAGCCGGATGTTCCGGCGAGCCGCGCGCTGGAGCGGAGGCTCCTCGGCAACAAGAGCAGAAACAGATCCCAGCGCTCGCCGCCAGGGGGCCGGAGAGGACCGTCTACAGCAGCACAGCGCACAGGCTGCGTTCCAAACCACGCACTAGCATACTAGCTCACTATTATGCAAATATGAAAGGGCCGTGTATTTGTGCGGCTAAGCCTAGGCGGTGAAGCGGCTAAAGCCCCGTACTACAGGAATGTGCGATTTGGAACGCAGCACTTCACAACCACTTACTAAAGGGACACGCTGTACCGTATTTTCAAGTGAACTAGATTACATCTAATAAACAGTGTTCTCCACACAGATACATCATGTTCAGATTAATCTAGTACAACTGAAACGTTTAAAAacgttgaaaaaaaaacattgcaattttttaacggaacattttaataatttataaatg

Function


symbol description
mkrn1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Is expressed in several structures, including brain; eye; gonad; integument; and liver. Human ortholog(s) of this gene implicated in central precocious puberty 2. Orthologous to several human genes including MKRN1 (makorin ring finger protein 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase makorin-1 isoform X1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU82685 True 890 TUCP 0.53 3 1984478 1993858

Neighbor


gene id symbol gene type direction distance location
LOC103035803 cnot4b,LOC108426397,LOC108279903,LOC107694291,LOC107757256,LOC107725638 coding downstream 9134 1941780 ~ 1975344 (-)
LOC103024775 LOC103024775,LOC108436013,LOC107690649,LOC107757234,LOC107694311 coding downstream 558551 1405826 ~ 1425927 (-)
LOC103022099 LOC108426406 coding downstream 1320389 622774 ~ 664089 (-)
LOC103022401 LOC108279736 coding downstream 1374306 602982 ~ 610172 (-)
LOC103023324 btbd11a,LOC108426402,LOC108279962,LOC107757250,LOC107725623,LOC107694300 coding downstream 1454733 222361 ~ 529745 (-)
il17ra NA coding upstream 18596 2012454 ~ 2022151 (-)
rergl rergl,rergla,LOC107560713,LOC107594299 coding upstream 55901 2049759 ~ 2056722 (-)
arhgef39 arhgef39,LOC107757260,LOC107694288,LOC107725686,LOC107655603 coding upstream 99718 2093576 ~ 2152621 (-)
mgst1 mgst1,mgst1.1,LOC108426351,LOC107694287,LOC107725525,LOC107555141,LOC107757263 coding upstream 372228 2366086 ~ 2370383 (-)
LOC103036743 LOC108426350,LOC107757264,LOC107594552,LOC107694246 coding upstream 379238 2373096 ~ 2377265 (-)
G61248 tmem178b,LOC107725619,LOC107694293,LOC107655551 non-coding downstream 49099 1928386 ~ 1935379 (-)
LOC111192930 NA non-coding downstream 112486 1866565 ~ 1871992 (-)
G61171 NA non-coding downstream 129535 1853878 ~ 1854943 (-)
G61158 NA non-coding downstream 159043 1824730 ~ 1825435 (-)
LOC111192929 NA non-coding downstream 167756 1813372 ~ 1816722 (-)
G61261 NA non-coding upstream 47170 2041028 ~ 2041306 (-)
G61265 NA non-coding upstream 63262 2057120 ~ 2057332 (-)
LOC111192931 NA non-coding upstream 77515 2071373 ~ 2085875 (-)
G61359 NA non-coding upstream 541865 2535723 ~ 2535933 (-)
G61361 NA non-coding upstream 578839 2572697 ~ 2573509 (-)
LOC103032312 LOC103032312,LOC108426389 other upstream 460689 2454547 ~ 2458126 (-)
LOC103031776 NA other upstream 470976 2464834 ~ 2534353 (-)
G61587 NA other upstream 1320295 3314153 ~ 3315239 (-)
mdm1 NA other upstream 1535662 3529520 ~ 3548702 (-)
G61676 NA other upstream 1656987 3650845 ~ 3658268 (-)

Expression



Co-expression Network