G61302 (dera,LOC107725660,LOC107655558,LOC107587132,LOC107594694,LOC107694244)


Basic Information

Item Value
gene id G61302
gene name dera,LOC107725660,LOC107655558,LOC107587132,LOC107594694,LOC107694244
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 2415033 ~ 2424116 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU82750
CTACCTTGTGGCCTGTCCTCAGGTAGTAGTCGCGGATTGCCCGCACCATTACTATCGCAACAGGGTAGGTGGCGTTGACGGATTCTTTGCCAGTTGAGGTTTTGATGAAGTCAGATCCTGCCATCATGGACACCAGACTGGCCTTGTAGACATTGGTGAAGGTGCCCAGCTCTCCTATTGCCAGGATAGTCTTCATGTGGGCATCGCCGCATGCCTCCCGAAACTGACGGATCTCATCATACATGGctGCCCACTGCCCAGTAAGAGCCAACGTGCGATTAATAACAATGTCGATTTCAGTGGCTCCATCCTGTACAGCCATGCGGACCTCCTCCAGACGAGTCTTTAATGGAGTCTGACCGGCAGGGAATCCGGTAGCCACTGAGGCTACAGGTAGGCTGGAGTTAGCCGCTTTCAAAGACTTTACAGCATCAGCCACGCGAGACGGGTAGACGCACACTGCAGCTGTTGAAATACCTTTATCGTGCATGTCCATGCTTTTCAGCAGGTCTTGGCGGACTGGCTGTACGGCCTTCATACAGAGCCGGTGAACATTGGATGGCGTGTCGTCTCCAGCGAGGGTCGTAAGGTCGATACACGTTACGGCCTTCAGGAGCCAGGCTGCCTGCCACTGTTTCTTGGCCACTTTACATCCCTGAACTTGTTGTGCCCTTTTCAGCACAGCCTGGGTATTAACTCTGACCTTTGACACCCACTCGAGGTCCAGATCCATCCCCGGGTTTCTGGAGGACATGCTGAAGATCAGAATCAGCCCAAACCCAACCAGAGAAGATTAATCCAGCCTGACCTGCAGAAACACCTCAAACAGCTCGAGCTGCTCACACTGCTCTACTTCCTCATCTCTCACCCTATC

Function

symbol description
dera Predicted to enable deoxyribose-phosphate aldolase activity. Predicted to be involved in carbohydrate catabolic process and deoxyribonucleotide catabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including intermediate cell mass of mesoderm; liver; pronephric duct; retinal pigmented epithelium; and ventral mesoderm. Orthologous to human DERA (deoxyribose-phosphate aldolase).

NR:

description
deoxyribose-phosphate aldolase isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82750 True 874 lncRNA 0.53 7 2415033 2424116

Neighbor

gene id symbol gene type direction distance location
lmo3 lmo3,LOC107757261,LOC107550907 coding upstream 90773 2274367 ~ 2324260 (+)
tmem121b cecr6 coding upstream 409787 2003842 ~ 2005246 (+)
mkrn1 mkrn1,LOC107725576 coding upstream 413404 1984873 ~ 2001629 (+)
LOC103022068 asb13a.2,LOC103022068,LOC108436004,LOC108280001,LOC107754063,LOC107560715,LOC107655562 coding upstream 553195 1846538 ~ 1861838 (+)
LOC103022369 LOC103022369,LOC108436003 coding upstream 569271 1842278 ~ 1845762 (+)
wif1 wif1,LOC107757271,LOC107594874,LOC107725640 coding downstream 190092 2614208 ~ 2642104 (+)
LOC103029880 NA coding downstream 229489 2653605 ~ 2657494 (+)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding downstream 843848 3267964 ~ 3292593 (+)
dyrk2 dyrk2,LOC107694272,LOC107757277,LOC107655591 coding downstream 918603 3342719 ~ 3373751 (+)
rap1b rap1b,LOC106576640,LOC107695907 coding downstream 1138629 3562745 ~ 3642423 (+)
G61236 arhgef39,LOC107725686,LOC107655603 non-coding upstream 262447 2118799 ~ 2152586 (+)
G61233 NA non-coding upstream 321001 2090861 ~ 2094032 (+)
G61222 NA non-coding upstream 381746 2033003 ~ 2033287 (+)
G61168 NA non-coding upstream 559687 1853315 ~ 1855346 (+)
trnay-gua_8 NA non-coding upstream 593257 1821689 ~ 1821776 (+)
G61316 NA non-coding downstream 21963 2446079 ~ 2451509 (+)
G61317 LOC103032312 non-coding downstream 30463 2454579 ~ 2461811 (+)
G61320 NA non-coding downstream 42394 2466510 ~ 2469484 (+)
G61330 NA non-coding downstream 149703 2573819 ~ 2574425 (+)
G61334 NA non-coding downstream 152163 2576279 ~ 2581632 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 479534 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 606103 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 933615 1445635 ~ 1481418 (+)
G61014 NA other upstream 1365977 806565 ~ 1049056 (+)
G61575 NA other downstream 872430 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 3316439 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 3357975 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 3558120 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 4427114 6851230 ~ 6855762 (+)

Expression


Co-expression Network