G61427


Basic Information

Item Value
gene id G61427
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 2682676 ~ 2683840 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU82916
ttcagccaagaacagaaagctgaagcTGCAGTGGGCACAGACTCACCAACACTGGAACTTTGAAGGTTGGAAAACTGTAGCCTGGCTTGATTTCTACAGCATCTTGATTGCTGCTAAAGCTAACACAGAGAGTAGGATCAGAATTAAGCACCTAATTCAACAGCTGAAATCAGTGCACCCAACCAGCCTTGTGTCTACAGTCATGAATGGTAAAAACCTGCAACTTGGAGCTTTGTGACGCAGTCGTATTACCATGAACCAGAACCTTAATACTTGGAATCCATTCCATTTATGAGACATTGAGGCCAAGTTTTAAGAGCAAAGTGAGACAGGCCATACATAGTATGGGTGTATAATGTGTAAATTCTGATAAAATGCTTGGTGGAGTGGAATTCCACAGTATTTCTAAGCCTGTCTATTGGCTTCTCTAGGGGTATGTTTGTAGACATTCAACTGACGATGAAAGTTTGATAAGGCTGTTTCTAAACAGGCATACCACTGCATAATTCATTTGGTGTTAAATGATTGTGAAATGAATGATTATTGAGAAATGCAAATATTGTATATAGCTACTCtatatgtctaaatgtttgtgcaAACTCCTCTAGCCCCTGTGgagtatattacattacattacatttggcaggcGCTTTTGTTCCTGTACAGACTGCCTTTTAATGCTGGGCATAACGCCCACGAGGTCCGCAGACAGAGTAAGTGTGAATaagggggtttgccacgccccaCTCTATCGAAACTCGTCTGAAAACCGTGCttaataaagtacaaatatttgagtagtactgccaatagaataagaccaACTGGAGAAGACAAACATGAACATATTGGCATTAAGACACAAATACCAAGTTTGGGCAAGAGGTTATaaaactatttgttttttttttttgtaatgatgGTAATCCAAACTATAATTTTGTAATGAGTTGGGAACGGAAAGAATGGATGTTCCTTTTACCACCACtctgaataattatttatttagtctgtgcccactgcagcctcagctttctgttcttggctgaaaGAAGTGGGTCCTGTTGTGGTTTTATGCTGTTGTAGCCCACCCTCCTTAAGTtaggacttttattttacactctGAGATGCTTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82916 True 1136 lncRNA 0.40 2 2682676 2683840

Neighbor

gene id symbol gene type direction distance location
tmbim4 tmbim4,LOC107587136,LOC107655596,LOC107567270,LOC107757272,LOC107694279 coding downstream 14178 2661803 ~ 2668498 (-)
lemd3 lemd3,LOC106576661 coding downstream 69862 2600412 ~ 2612814 (-)
msrb3 msrb3,LOC107725596,LOC107757268,LOC107587134 coding downstream 85009 2574909 ~ 2597667 (-)
LOC103031987 NA coding downstream 210613 2466202 ~ 2472063 (-)
irak3 NA coding downstream 230774 2438077 ~ 2451902 (-)
LOC103044476 NA coding upstream 783362 3467202 ~ 3471553 (-)
rint1 rint1,LOC107725664,LOC107733011,LOC107553890,LOC107664862,LOC107695894,LOC107590313 coding upstream 1011347 3695187 ~ 3703230 (-)
LOC103030485 NA coding upstream 1150492 3834332 ~ 3838502 (-)
LOC103036484 NA coding upstream 1171702 3855542 ~ 3865736 (-)
LOC103036181 LOC108438810,LOC108279896 coding upstream 1184898 3868738 ~ 3889640 (-)
G61425 NA non-coding downstream 25201 2655787 ~ 2657475 (-)
G61361 NA non-coding downstream 109167 2572697 ~ 2573509 (-)
G61359 NA non-coding downstream 146743 2535723 ~ 2535933 (-)
LOC111192931 NA non-coding downstream 596801 2071373 ~ 2085875 (-)
G61265 NA non-coding downstream 625344 2057120 ~ 2057332 (-)
G61429 NA non-coding upstream 22952 2706792 ~ 2710406 (-)
G61559 NA non-coding upstream 561016 3244856 ~ 3245152 (-)
G61561 NA non-coding upstream 582798 3266638 ~ 3267010 (-)
G61595 NA non-coding upstream 658852 3342692 ~ 3342998 (-)
G61606 NA non-coding upstream 704793 3388633 ~ 3388871 (-)
LOC103031776 NA other downstream 148323 2464834 ~ 2534353 (-)
LOC103032312 LOC103032312,LOC108426389 other downstream 224550 2454547 ~ 2458126 (-)
G61251 mkrn1 other downstream 688818 1984478 ~ 1993858 (-)
G61587 NA other upstream 630313 3314153 ~ 3315239 (-)
mdm1 NA other upstream 845680 3529520 ~ 3548702 (-)
G61676 NA other upstream 967005 3650845 ~ 3658268 (-)
cdpf1 cdpf1,LOC107695897 other upstream 1156761 3840601 ~ 3846469 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other upstream 1651278 4335118 ~ 4426156 (-)

Expression


Co-expression Network