G61560


Basic Information

Item Value
gene id G61560
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3266308 ~ 3266887 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83050
atagactgtatataaagatggacgccgtgtcgccgttcccattcattcaatgaaaatgaagccaaaatcttccgccattttggcgattcagagaccagagtctgcgcagtagagaccagaggagggagaaagactgtggagagacagcctactcatttaaataaacccgcccctgagggctgcctcaacagagctcacacagtctgaCAAACCGAGCCGAGCGGAGAACTTATCTGCAGCACGATAAGGTTAATATTTTCATAGTAACAGTGCAGTTCGTGCACGTTATGGATATTAACCACATGATAACCACATGATAGTTCTGTATGTAGCAAGTGGAAGTGAATAAAATACagcgaaaaaaaaacatcaccaaaCGGCAGTGAATGCCAGGACTAGTTATTGCTTTAAACAACGAGACGAATCCCGTACTGAAGCTCAGTTAATTTTGCTGCTGAGACAAACTGAGCACATTTGGCTAAATTCTGCACGGATTATGCAGAGTCTAAACCAGTGCTGCCGTACATCAGCGGATCTCGGGCAGAGCCTTCATGCTATCTGGGTCAGCTTGCCGCACGCA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83050 True 580 lncRNA 0.46 1 3266308 3266887

Neighbor

gene id symbol gene type direction distance location
LOC103029880 NA coding upstream 608814 2653605 ~ 2657494 (+)
wif1 wif1,LOC107757271,LOC107594874,LOC107725640 coding upstream 624204 2614208 ~ 2642104 (+)
lmo3 lmo3,LOC107757261,LOC107550907 coding upstream 942048 2274367 ~ 2324260 (+)
tmem121b cecr6 coding upstream 1261062 2003842 ~ 2005246 (+)
mkrn1 mkrn1,LOC107725576 coding upstream 1264679 1984873 ~ 2001629 (+)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding downstream 1077 3267964 ~ 3292593 (+)
dyrk2 dyrk2,LOC107694272,LOC107757277,LOC107655591 coding downstream 75832 3342719 ~ 3373751 (+)
rap1b rap1b,LOC106576640,LOC107695907 coding downstream 295858 3562745 ~ 3642423 (+)
mcat mcat,LOC107553884,LOC107732994 coding downstream 378430 3645317 ~ 3651651 (+)
cfap54 NA coding downstream 389275 3656162 ~ 3694924 (+)
G61558 NA non-coding upstream 21179 3244857 ~ 3245129 (+)
G61401 NA non-coding upstream 315214 2950681 ~ 2951094 (+)
G61397 NA non-coding upstream 334900 2851175 ~ 2931408 (+)
G61370 NA non-coding upstream 608169 2657918 ~ 2658139 (+)
G61332 NA non-coding upstream 677132 2588071 ~ 2589176 (+)
G61607 NA non-coding downstream 127629 3394516 ~ 3397772 (+)
G61608 NA non-coding downstream 127892 3394779 ~ 3396035 (+)
G61657 rint1 non-coding downstream 428347 3695234 ~ 3697781 (+)
LOC111192864 NA non-coding downstream 445355 3712242 ~ 3713423 (+)
LOC111192865 NA non-coding downstream 446670 3713557 ~ 3714248 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 1330809 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 1457378 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 1784890 1445635 ~ 1481418 (+)
G61014 NA other upstream 2217252 806565 ~ 1049056 (+)
G61575 NA other downstream 29659 3296546 ~ 3303998 (+)
LOC111192936 NA other downstream 2473668 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 2515204 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 2715349 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 3584343 6851230 ~ 6855762 (+)

Expression


Co-expression Network