G61608


Basic Information

Item Value
gene id G61608
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3394779 ~ 3396035 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83120
cttagcaaccacctagtaactgcttagcaaccactctctctttctcactctctctctacttctctcactctctctttctcactctctctctacttctctcactctctctttctcactctctctctacttttcactctctcttttgctctctacttctctgtttctcactctctcttttgctctctacttatctacttctcgctctctcttttgctctctacttctcactctctcttttgctctctacttctctatttctcattatctctttctcactctctctctatgtctctatttctcact
>TU83121
cttagcaaccacctagtaactgcttagcaaccactctctctttctcactctctctctacttctctcactctctctttctcactctctctctacttctctcattctctgtttctcactctctcttttgctctctacttatctacttctcgctctctcttttgctctctacttctcactctctcttttgctctctacttctctatttctcactctctctttctctctttctcactctctctctacttctctatttctcactctctcttttgctctttacatttctttatttctcactctctctttctcactctctctacttctctatttctcactctcttttgctctctacttctctatttctcactctctttctcactctctctctacttctctatttctcac
>TU83122
cttagcaaccacctagtaactgcttagcaaccactctctctttctcactctctctctacttctctcactctctctttctcactctctctctacttctctcactctctctttctcactctctctctacttttcactctctcttttgctctctacttatctacttctcgctctctcttttgctctctacttctcactctctcttttgctctctacttctctatttctcactctctctttctctctttctcactctctctctatgtctctattctcactctcttttgctctctacttctctatttctcactctcttttgctctctacttctctatttctcactctttctttctcactctctctctacgtctctatttctcacactctctttctcactctctctacttctctatttctcactctctcttttgctctttacatttctttatttctcacttctctctctacttctctttcactctacttttctatgtcttgctttctctttctttttatgtctggaatatgttagcaactgcctagcaaccagttagcaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83120 False 303 lncRNA 0.41 2 3394779 3395394
TU83121 False 402 lncRNA 0.40 3 3394779 3395730
TU83122 True 555 lncRNA 0.40 4 3394779 3396035

Neighbor

gene id symbol gene type direction distance location
dyrk2 dyrk2,LOC107694272,LOC107757277,LOC107655591 coding upstream 21028 3342719 ~ 3373751 (+)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding upstream 102186 3267964 ~ 3292593 (+)
LOC103029880 NA coding upstream 737285 2653605 ~ 2657494 (+)
wif1 wif1,LOC107757271,LOC107594874,LOC107725640 coding upstream 752675 2614208 ~ 2642104 (+)
lmo3 lmo3,LOC107757261,LOC107550907 coding upstream 1070519 2274367 ~ 2324260 (+)
rap1b rap1b,LOC106576640,LOC107695907 coding downstream 166710 3562745 ~ 3642423 (+)
mcat mcat,LOC107553884,LOC107732994 coding downstream 249282 3645317 ~ 3651651 (+)
cfap54 NA coding downstream 260127 3656162 ~ 3694924 (+)
LOC103031106 LOC108438797 coding downstream 451008 3847043 ~ 3853727 (+)
LOC103029111 NA coding downstream 541456 3937491 ~ 3949734 (+)
G61560 NA non-coding upstream 127892 3266308 ~ 3266887 (+)
G61558 NA non-coding upstream 149650 3244857 ~ 3245129 (+)
G61401 NA non-coding upstream 443685 2950681 ~ 2951094 (+)
G61397 NA non-coding upstream 463371 2851175 ~ 2931408 (+)
G61370 NA non-coding upstream 736640 2657918 ~ 2658139 (+)
G61657 rint1 non-coding downstream 299199 3695234 ~ 3697781 (+)
LOC111192864 NA non-coding downstream 316207 3712242 ~ 3713423 (+)
LOC111192865 NA non-coding downstream 317522 3713557 ~ 3714248 (+)
LOC103028258 NA non-coding downstream 615349 4011384 ~ 4044308 (+)
G61804 NA non-coding downstream 660404 4056439 ~ 4056959 (+)
G61575 NA other upstream 90781 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 1459280 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 1585849 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 1913361 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 2351463 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 2344520 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 2386056 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 2586201 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 3455195 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 5005805 8401840 ~ 8415039 (+)

Expression


Co-expression Network