G61630


Basic Information

Item Value
gene id G61630
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3512201 ~ 3515815 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83158
CAAGGTTCTAATGTGATACACAGAGCttggctttattatttattattattattattattattattattattattattatgcgtgtattattattaccaaTATTGGCTTATTTTCTGACTCATTAGAAGAGCAGCGGCAATGCAACAATTGATGGAAACATGTACAAGATGATCGCAAGTATGGAGAAATCTTTTAAAAAGCTGGGTTCAGAGGAGCTGTTGTATGCTGTGGGAGATTTCCAGACAGTTCTGAACTGGATCAGCATCGACAGTGACCCAAAACTCTCTGTGAACAAATGCCAGAAGTAGTatctaaaaaacacaaatggacacacacacacacgcacacacacacgtacacgtacacacacacaacacttatATTGTGCCTAGTAATCACTccatgtatttactgtattttgaaATATGAGTAAATAAGCATAGTGAATATTTCTGGAGCTCCGATTAGAACAAAATACCTCTGTATTCTACACCTCTACTATCCACATACAATCCATTGGCTGGGATTTCATGAAGTCAGCCCGGCCTACTCGATAACACCATCAACACAATCCAATAAGACCCAGAAGAAGAGAAGACGAGTGCACTGGATGAAGCTTCTCACAGACAAACTGGATGGCATCATTGGAATGACATCACCTGCAACTGAACACGAGACAAGCTGTGGTGAAACCCGACACGACCTCAGCAAGCTTTTCACTTCAGTACCTTTATGCACCTCTTCAGTGGGTCAGACTAGATGTAGCAATTGTTACCTCTCCAGTATTGCCTTAACAGTGTTAGAGATTTATGTTGTTATgttgtatttagtatttatttgcTCATGGTTTGACAATATTCCACAATTCAAGGATCTATCAGTATGTAttttatgcatatttatttatatttaagttattCCAAAGTttctttacataatttatta
>TU83160
ACCTAATTAGCAAAGAGCAGCGGCAATGCAACAATTGATGGAAACATGTACAAGATGATCGCAAGTATGGAGAAATCTTTTAAAAAGCTGGGTTCAGAGGAGCTGTTGTATGCTGTGGGAGATTTCCAGACAGTTCTGAACTGGATCAGCATCGACAGTGACCCAAAACTCTCTGTGAACAAATGCCAGAAGTAGTatctaaaaaacacaaatggacacacacacacacgcacacacacacgtacacgtacacacacacaacacttatATTGTGCCTAGTAATCACTccatgtatttactgtattttgaaATATGAGTAAATAAGCATAGTGAATATTTCTGGAGCTCCGATTAGAACAAAATACCTCTGTATTCTACACCTCTACTATCCACATACAATCCATTGGCTGGGATTTCATGAAGTCAGCCCGGCCTACTCGATAACACCATCAACACAATCCAATAAGACCCAGAAGAAGAGAAGACGAGTGCACTGGATGAAGCTTCTCACAGACAAACTGGATGGCATCATTGGAATGACATCACCTGCAACTGAACACGAGACAAGCTGTGGTGAAACCCGACACGACCTCAGCAAGCTTTTCACTTCAGTACCTTTATGCACCTCTTCAGTGGGTCAGACTAGATGTAGCAATTGTTACCTCTCCAGTATTGCCTTAACAGTGTTAGAGATTTATGTTGTTATgttgtatttagtatttatttgcTCATGGTTTGACAATATTCCACAATTCAAGGATCTATCAGTATGTAttttatgcatatttatttatatttaagttattCCAAAGTttctttacataatttatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83158 True 945 lncRNA 0.37 3 3512201 3515166
TU83160 False 832 lncRNA 0.39 3 3512201 3515815

Neighbor

gene id symbol gene type direction distance location
LOC103044476 NA coding downstream 40648 3467202 ~ 3471553 (-)
grip1 grip1 coding downstream 486334 2673173 ~ 3025867 (-)
tmbim4 tmbim4,LOC107587136,LOC107655596,LOC107567270,LOC107757272,LOC107694279 coding downstream 843703 2661803 ~ 2668498 (-)
lemd3 lemd3,LOC106576661 coding downstream 899387 2600412 ~ 2612814 (-)
msrb3 msrb3,LOC107725596,LOC107757268,LOC107587134 coding downstream 914534 2574909 ~ 2597667 (-)
rint1 rint1,LOC107725664,LOC107733011,LOC107553890,LOC107664862,LOC107695894,LOC107590313 coding upstream 179372 3695187 ~ 3703230 (-)
LOC103030485 NA coding upstream 318517 3834332 ~ 3838502 (-)
LOC103036484 NA coding upstream 339727 3855542 ~ 3865736 (-)
LOC103036181 LOC108438810,LOC108279896 coding upstream 352923 3868738 ~ 3889640 (-)
LOC103029733 LOC108438795 coding upstream 384386 3900201 ~ 3915629 (-)
G61611 NA non-coding downstream 113431 3398558 ~ 3398770 (-)
G61610 NA non-coding downstream 114429 3396720 ~ 3397772 (-)
G61609 NA non-coding downstream 116344 3394778 ~ 3395857 (-)
G61606 NA non-coding downstream 123330 3388633 ~ 3388871 (-)
G61595 NA non-coding downstream 169203 3342692 ~ 3342998 (-)
G61670 rap1b,LOC106576640,LOC107695907 non-coding upstream 46956 3562771 ~ 3642517 (-)
G61746 NA non-coding upstream 272287 3788102 ~ 3854961 (-)
G61754 NA non-coding upstream 331213 3847028 ~ 3851116 (-)
G61760 NA non-coding upstream 420869 3936684 ~ 3937790 (-)
G61785 NA non-coding upstream 493622 4009437 ~ 4009943 (-)
G61587 NA other downstream 196962 3314153 ~ 3315239 (-)
LOC103031776 NA other downstream 977848 2464834 ~ 2534353 (-)
LOC103032312 LOC103032312,LOC108426389 other downstream 1054075 2454547 ~ 2458126 (-)
G61251 mkrn1 other downstream 1518343 1984478 ~ 1993858 (-)
mdm1 NA other upstream 13705 3529520 ~ 3548702 (-)
G61676 NA other upstream 135030 3650845 ~ 3658268 (-)
cdpf1 cdpf1,LOC107695897 other upstream 324786 3840601 ~ 3846469 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other upstream 819303 4335118 ~ 4426156 (-)
G61942 NA other upstream 1106398 4622213 ~ 4622577 (-)

Expression


Co-expression Network