G61676


Basic Information

Item Value
gene id G61676
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3650845 ~ 3658268 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83243
AAAATAAGGGCGTGGTTTAATCCCCCTCAGGCACACACCTGTAACCGAAAACGATTAAAGGACGCTGCTGGCGGCGTCCGTTTTAATCTACAGCTCAGATTACAAAATGGTACAACAAGCACACGAAGCAAGCGATGACATTTCCCCCCAGGCTGGACCTAGCGAGGTGGAAAATCACATGCTGTCTGACATCGGCATGAGTGTGAGATCTGCTCAGCAGATCGGCCGTCAGCTGGCTCAGATTGGCGATGAAATGAACAGCAGGTGGAGTGAAAAGCTTCGTAACCAGTGGCCACAACATCAGCACTGGCAGGGATATGGGAATGTGTTGAACTTTGCAGCTATGAATGGGCAAGTATCTTCTCTTCATCATCTCAGTGTAC
>TU83244
TTTACTAGCCGGTTTTATTGCTGATTGTTCATGGAGCACacttataaatgtgttttaaacatgTTGATACAGCAGGATCGTTGGACGTCTCCAGTGGTCCAGGATCATGCCAATGGTCAGGGCATCCTGGGTGGTTCCTCAGCTGCACAGTCAGGCCTGCCAGACAGCTATAAAGTGGATGAGCTGGGTCTGCAACTTGCACTTTCCTGACTGGTCTGGGAGGACCAAGGGTTTCCTGGCTTCAGCTCTCTTGCTGGTTGCTGCAGCTGCCTTCACTGCAACCTGGAAAATGTCTGAGAGTTAGACAGTCCCCCCAGACAAGAGCCAAGAGCAGGTCTTGGGCTCAGTAAAAAtcatgagtgttttttttttttttttaatataatttttatatgatTCTTTTCTAGCTGACTGTAATAGAAGTGCTGGTTCACACTGAAGTTTTTGTAAGTTGTTTGATACTGTTGCTGGTTTACAGAAGGGTCTGTTGCTGGTTAATTGGGCCATATTTTCTTACCTCTTCCTATACAGGCATTTCTGCCCTACTTAAGGAAGCTGGACTTTCAATTTCAAATTGTCCAAATAATAtttgaaataaacaataaatatatact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83243 False 383 TUCP 0.49 4 3651966 3658268
TU83244 True 614 lncRNA 0.42 2 3650845 3651547

Neighbor

gene id symbol gene type direction distance location
LOC103044476 NA coding downstream 179292 3467202 ~ 3471553 (-)
grip1 grip1 coding downstream 624978 2673173 ~ 3025867 (-)
tmbim4 tmbim4,LOC107587136,LOC107655596,LOC107567270,LOC107757272,LOC107694279 coding downstream 982347 2661803 ~ 2668498 (-)
lemd3 lemd3,LOC106576661 coding downstream 1038031 2600412 ~ 2612814 (-)
msrb3 msrb3,LOC107725596,LOC107757268,LOC107587134 coding downstream 1053178 2574909 ~ 2597667 (-)
rint1 rint1,LOC107725664,LOC107733011,LOC107553890,LOC107664862,LOC107695894,LOC107590313 coding upstream 36919 3695187 ~ 3703230 (-)
LOC103030485 NA coding upstream 176064 3834332 ~ 3838502 (-)
LOC103036484 NA coding upstream 197274 3855542 ~ 3865736 (-)
LOC103036181 LOC108438810,LOC108279896 coding upstream 210470 3868738 ~ 3889640 (-)
LOC103029733 LOC108438795 coding upstream 241933 3900201 ~ 3915629 (-)
G61670 rap1b,LOC106576640,LOC107695907 non-coding downstream 8328 3562771 ~ 3642517 (-)
G61630 NA non-coding downstream 135030 3512201 ~ 3515815 (-)
G61611 NA non-coding downstream 252075 3398558 ~ 3398770 (-)
G61610 NA non-coding downstream 253073 3396720 ~ 3397772 (-)
G61609 NA non-coding downstream 254988 3394778 ~ 3395857 (-)
G61746 NA non-coding upstream 129834 3788102 ~ 3854961 (-)
G61754 NA non-coding upstream 188760 3847028 ~ 3851116 (-)
G61760 NA non-coding upstream 278416 3936684 ~ 3937790 (-)
G61785 NA non-coding upstream 351169 4009437 ~ 4009943 (-)
G61818 NA non-coding upstream 352520 4010788 ~ 4013340 (-)
mdm1 NA other downstream 102143 3529520 ~ 3548702 (-)
G61587 NA other downstream 335606 3314153 ~ 3315239 (-)
LOC103031776 NA other downstream 1116492 2464834 ~ 2534353 (-)
LOC103032312 LOC103032312,LOC108426389 other downstream 1192719 2454547 ~ 2458126 (-)
G61251 mkrn1 other downstream 1656987 1984478 ~ 1993858 (-)
cdpf1 cdpf1,LOC107695897 other upstream 182333 3840601 ~ 3846469 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other upstream 676850 4335118 ~ 4426156 (-)
G61942 NA other upstream 963945 4622213 ~ 4622577 (-)
G62377 NA other upstream 2716201 6374469 ~ 6374980 (-)
pphln1 pphln1,LOC108279830 other upstream 2974742 6633010 ~ 6695389 (-)

Expression


Co-expression Network