G61804


Basic Information

Item Value
gene id G61804
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4056439 ~ 4056959 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83399
GATTCACATTCCGACTGTAATCCATCGTGTCCAAGACCACTTTTTTTAGACGGCAGTGTCGCGAAAACATAGGGTCCTAGCACTGCTATACCGTGGTATACATATAtaccacatgtgtcaaacacaaggcccgcgggccaaatgtggcccgccacgtctttttatgtggcccgcgagagcttgtaaaatcttagtgtctataataaataggtcagaagcgttctttgaccaaaaaataaatttcccacaatgcttgtcgattgtattacccgcaaagttacggcttactgccactacacggcagtgtagtcattgatgtggaaaccctgccggagggaaggtgtaacttcgcgggtggaattgagacatgtttatcccataatatccagaaaaagaaaagttgatgcagacggacggctgtgcttcaaggcgaaagaccggtatgcattttgtgttactgaccaaaataaa

Function

NR:

description
PREDICTED: leucine-rich repeat extensin-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83399 True 471 lncRNA 0.45 2 4056439 4056959

Neighbor

gene id symbol gene type direction distance location
atxn10 atxn10 coding upstream 87483 3956662 ~ 3968956 (+)
LOC103029111 NA coding upstream 106705 3937491 ~ 3949734 (+)
LOC103031106 LOC108438797 coding upstream 202712 3847043 ~ 3853727 (+)
cfap54 NA coding upstream 361515 3656162 ~ 3694924 (+)
mcat mcat,LOC107553884,LOC107732994 coding upstream 404788 3645317 ~ 3651651 (+)
mcm10 NA coding downstream 26724 4083683 ~ 4099389 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding downstream 618400 4675359 ~ 4701435 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding downstream 1194174 5251133 ~ 5261551 (+)
LOC107197570 LOC108442310 coding downstream 1364809 5421768 ~ 5423304 (+)
LOC111192904 NA coding downstream 1955887 6012846 ~ 6015114 (+)
LOC103028258 NA non-coding upstream 12131 4011384 ~ 4044308 (+)
LOC111192865 NA non-coding upstream 342191 3713557 ~ 3714248 (+)
LOC111192864 NA non-coding upstream 343016 3712242 ~ 3713423 (+)
G61657 rint1 non-coding upstream 358658 3695234 ~ 3697781 (+)
G61607 NA non-coding upstream 658667 3394516 ~ 3397772 (+)
G61815 NA non-coding downstream 65723 4122682 ~ 4122963 (+)
G61790 NA non-coding downstream 73358 4130317 ~ 4131090 (+)
G61786 NA non-coding downstream 74804 4131763 ~ 4136771 (+)
G61852 NA non-coding downstream 86102 4143061 ~ 4143691 (+)
LOC111192934 LOC108425385,LOC108279691,LOC107710083 non-coding downstream 262893 4319852 ~ 4325034 (+)
G61575 NA other upstream 752441 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 2120940 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 2247509 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 2575021 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 3013123 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 1683596 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 1725132 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 1925277 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 2794271 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 4344881 8401840 ~ 8415039 (+)

Expression


Co-expression Network