G61833 (ppara)


Basic Information

Item Value
gene id G61833
gene name ppara
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4073769 ~ 4075972 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83434
GACTGGACactatacatttataattattttcagaGCTCAAAGCCAAACTACTGTACATCAACTGCCATATTTAACAGCTGATCACAATCATGACGTAAATATTCTGTTAAACTAGATCCATTAGTTTAACCAAGGTCCCTTTACACACAAAAAGAACATTTCTCATTCTTTTTCCACTGAGAAAAGCATTACAGCTATTTCTACTGAAATAAGTGCCAGTCTTGTAGCGTACCTGCTGTAGTCTAGTGCTGAGGTGGGtaatcatattttaaagttCATAGCTAAACTCTGATTTTCCCTGAGAATCTAAGACAATACAATATTCCCTGAAATGAGCATAATATCCCCCATTTACATACTTTGTTTTCTGCATAGAATTACATAATGCGGCTGAAAAACGCTATTGTAATTAGGATGcaatatacattatacagtTCTAAACAAAATGTAGAGACCACCCCTCATTTATTTGCTATTCAGTTACATCACATCACACTGGCTTGTTTGGCCCTGTTGGTTTGATCCTATACAAAGCTTATTTCTACCTTGCATATAAAGATGGATGGATACGTTCTGAGAAgctaaaatcatttatttaatttgtgaatgtgtttgtccatcatttttttccactgtAAAATGTGACTGTGGAGACGTCtaacacatttttaacaatttCTGTTACTCTGACATGACAAAAgccatgggatagcagtatgcaTATTGGTAAAAAATGTTAACCCAGGGGACGGCTTGGGAATGGCTacacttgtataagttgtgaaatgttgtcttgtgagtgaggatgaacagtgataaaactctagcatccggactgcaattaaaaaaacaggaggaccactGAGTTTTTGGGCTTTCTTAGTCATGTgacattgtgttcagtagctTCTCCATTTCCACCTGccgttgtgtttacgtggatcttcATTGAAatcagtggacaaatagctattttattaaacatgaggaGACGAatctcagagatgtgcgtccaaACGGgtctaaaattaccggaggaccaaggagttcagcgaaaaacagtaggtaattcagcttgattttttttcagaggacatctgagaaaaacacgtacatgataaTTTGACATCGTTCTTCCATGGATCACAACAAAATCACTGGATTTGATACTATTTCAATGCCCTATgatatttggcatgtcagtgtaaaattacatattgTACTTAAATTGTTTtgataatttaaatgtaataaaagaaaGGTGGTGTCTATCTTTCACACAGCCCTGTTTTAGAAGACATACTATgaaaagcacaaaataaaagGAAACCAAGAAAAAGGCACATTCTTTTCcaaatgagacacacacacacacacacacacattaacattcAGTCATATATTAATTAGCTTCTTCTAATGGCACTGGTttcatattttcaaaaataaataacatcttTTGATTAATAAAGGTGGAGTGCATAAACTGTTTATATTCACATTCTTACAACTAAAACTACTATACATGTTAATCCAGCATTTATTCTATTCACATTATTACTACAGATGCGTTTTGAAAATagcttacacactgctttcagAAGGTATAAAACAACTTCACTTCAAAAATTCATGGCAAGAAGTTTGATTGGCAGTGATGTCAGAGAAACTGTTGATTGAAGGACCTGCTTGCAGCAGTGTTTTCGTGTGTGTTGTACATCTCTGAATGAAGGCTTGTACTGCAGTCTATAGGTTAGGCGGATTAATGGACAGCCATTAAAATCTTAAACTCTTGCAAAATCCATGATAGTTTACTGTTTCGGAACTGTGATCAGCGCGAATCCAACTTCCACCAGACCACCAGAGTTTATCAAAGGCAGCCTGAAATCCAGTCTTACCACCCAAAGGTTCAGTCCTCAGTACATATCCTTGTAGATTTCCTGCAGTAGTGGGTGGAGAAAACTGTCCTGTGTGTTCTTAATGTCCTCCACCAGCTGAGCGTGCTCTGTTACCAGCTCCCGAAGGTCAGCCAGTTTCTGCAGGAGTTTGGGGAAGAGCATGGTGTTGTCAGGGTGGTTGGCCTGCAGATGGAGTCGTAGAGCATTGACGATACTTTCTTGAATGCATTCAATGTCTGACACGTTTGCCAGTCCTGGTCGG
>TU83436
GACTGGACactatacatttataattattttcagaGCTCAAAGCCAAACTACTGTACATCAACTGCCATATTTAACAGCTGATCACAATCATGACGTAAATATTCTGTTAAACTAGATCCATTAGTTTAACCAAGGTCCCTTTACACACAAAAAGAACATTTCTCATTCTTTTTCCACTGAGAAAAGCATTACAGCTATTTCTACTGAAATAAGTGCCAGTCTTGTAGCGTACCTGCTGTAGTCTAGTGCTGAGGTGGGtaatcatattttaaagttCATAGCTAAACTCTGATTTTCCCTGAGAATCTAAGACAATACAATATTCCCTGAAATGAGCATAATATCCCCCATTTACATACTTTGTTTTCTGCATAGAATTACATAATGCGGCTGAAAAACGCTATTGTAATTAGGATGcaatatacattatacagtTCTAAACAAAATGTAGAGACCACCCCTCATTTATTTGCTATTCAGTTACATCACATCACACTGGCTTGTTTGGCCCTGTTGGTTTGATCCTATACAAAGCTTATTTCTACCTTGCATATAAAGATGGATGGATACGTTCTGAGAAgctaaaatcatttatttaatttgtgaatgtgtttgtccatcatttttttccactgtAAAATGTGACTGTGGAGACGTCtaacacatttttaacaatttCTGTTACTCTGACATGACAAAAgccatgggatagcagtatgcaTATTGGTAAAAAATGTTAACCCAGGGGACGGCTTGGGAATGGCTacacttgtataagttgtgaaatgttgtcttgtgagtgaggatgaacagtgataaaactctagcatccggactgcaattaaaaaaacaggaggaccactGAGTTTTTGGGCTTTCTTAGTCATGTgacattgtgttcagtagctTCTCCATTTCCACCTGccgttgtgtttacgtggatcttcATTGAAatcagtggacaaatagctattttattaaacatgaggaGACGAatctcagagatgtgcgtccaaACGGgtctaaaattaccggaggaccaaggagttcagcgaaaaacagtaggtaattcagcttgattttttttcagaggacatctgagaaaaacacgtacatgataaTTTGACATCGTTCTTCCATGGATCACAACAAAATCACTGGATTTGATACTATTTCAATGCCCTATgatatttggcatgtcagtgtaaaattacatattgTACTTAAATTGTTTtgataatttaaatgtaataaaagaaaGGTGGTGTCTATCTTTCACACAGCCCTGTTTTAGAAGACATACTATgaaaagcacaaaataaaagGAAACCAAGAAAAAGGCACATTCTTTTCcaaatgagacacacacacacacacacacacacacacacacacacacacacacacattaacattcAGTCATATATTAATTAGCTTCTTCTAATGGCACTGGTttcatattttcaaaaataaataacatcttTTGATTAATAAAGGTGGAGTGCATAAACTGTTTATATTCACATTCTTACAACTAAAACTACTATACATGTTAATCCAGCATTTATTCTATTCACATTATTACTACAGATGCGTTTTGAAAATagcttacacactgctttcagAAGGTATAAAACAACTTCACTTCAAAAATTCATGGCAAGAAGTTTGATTGGCAGTGATGTCAGAGAAACTGTTGATTGAAGGACCTGCTTGCAGCAGTGTTTTCGTGTGTGTTGTACATCTCTGAATGAAGGCTTGTACTGCAGTCTATAGGTTAGGCGGATTAATGGACAGCCATTAAAATCTTAAACTCTTGCAAAATCCATGATAGTTTACTGTTTCGGAACTGTGATCAGCGCGAATCCAACTTCCACCAGACCACCAGAGTTTATCAAAGGCAGCCTGAAATCCAGTCTTACCACCCAAAGGTTCAGTCCTCAGTACATATCCTTGTAGATTTCCTGCAGTAGTGGGTGGAGAAAACTGTCCTGTGTGTTCTTAATGTCCTCCACCAGCTGAGCGTGCTCTGTTACCAGCTCCCGAAGGTCAGCCAGTTTCTGCAGGAGTTTGGGGAAGAGCATGGTGTTGTCAGGGTGGTTGGCCTGCAGATGGAGTCGTAGAGCATTGACGATACTTTCTTGAATGCATTCAATGTCTGACACGTTTGCCAGTCCTGGTCGG

Function

symbol description
ppara Enables several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; steroid hormone receptor activity; and ubiquitin conjugating enzyme binding activity. Involved in several processes, including negative regulation of lipid storage; regulation of lipid metabolic process; and regulation of nucleobase-containing compound metabolic process. Acts upstream of or within negative regulation of protein kinase B signaling; negative regulation of transforming growth factor beta receptor signaling pathway; and positive regulation of viral genome replication. Located in nucleoplasm. Implicated in Alzheimer's disease; coronary artery disease; hepatocellular carcinoma; lipid metabolism disorder; and myocardial infarction. Biomarker of cystic fibrosis and fatty liver disease.

NR:

description
PREDICTED: peroxisome proliferator-activated receptor alpha isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83434 False 2160 lncRNA 0.38 2 4073769 4075972
TU83436 True 2184 lncRNA 0.38 2 4073769 4075972

Neighbor

gene id symbol gene type direction distance location
wnt7b wnt7b,wnt7ba,LOC103028473,LOC107695867,LOC107725526,LOC107732964 coding downstream 83287 3968846 ~ 3990482 (-)
LOC103029416 LOC108438794 coding downstream 143166 3919017 ~ 3930603 (-)
LOC103029733 LOC108438795 coding downstream 158140 3900201 ~ 3915629 (-)
LOC103036181 LOC108438810,LOC108279896 coding downstream 184129 3868738 ~ 3889640 (-)
LOC103036484 NA coding downstream 208033 3855542 ~ 3865736 (-)
LOC103027117 LOC103027117,LOC108438787 coding upstream 24993 4100965 ~ 4114368 (-)
phyh phyh,LOC107743808 coding upstream 40766 4116738 ~ 4121756 (-)
LOC111192866 NA coding upstream 48818 4124790 ~ 4127308 (-)
LOC103040249 tnnt2e,LOC108425385,LOC108279691,LOC107658902 coding upstream 242468 4318440 ~ 4334012 (-)
LOC107197701 zgc:101560,LOC108425328,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC107658770,LOC107584059 coding upstream 371904 4447876 ~ 4461525 (-)
G61818 NA non-coding downstream 60429 4010788 ~ 4013340 (-)
G61785 NA non-coding downstream 63826 4009437 ~ 4009943 (-)
G61760 NA non-coding downstream 135979 3936684 ~ 3937790 (-)
G61746 NA non-coding downstream 218808 3788102 ~ 3854961 (-)
G61754 NA non-coding downstream 222653 3847028 ~ 3851116 (-)
G61837 NA non-coding upstream 7752 4083724 ~ 4099381 (-)
G61851 NA non-coding upstream 54367 4130339 ~ 4130964 (-)
G61856 NA non-coding upstream 73579 4149551 ~ 4149817 (-)
LOC111192867 NA non-coding upstream 236077 4312049 ~ 4313739 (-)
G61907 NA non-coding upstream 447187 4523159 ~ 4523371 (-)
cdpf1 cdpf1,LOC107695897 other downstream 227300 3840601 ~ 3846469 (-)
G61676 NA other downstream 415501 3650845 ~ 3658268 (-)
mdm1 NA other downstream 525067 3529520 ~ 3548702 (-)
G61587 NA other downstream 758530 3314153 ~ 3315239 (-)
LOC103031776 NA other downstream 1539416 2464834 ~ 2534353 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other upstream 259146 4335118 ~ 4426156 (-)
G61942 NA other upstream 546241 4622213 ~ 4622577 (-)
G62377 NA other upstream 2298497 6374469 ~ 6374980 (-)
pphln1 pphln1,LOC108279830 other upstream 2557038 6633010 ~ 6695389 (-)
G62484 NA other upstream 2595638 6671610 ~ 6737948 (-)

Expression


Co-expression Network