G61873 (LOC108425386,LOC107710121,LOC107656362,LOC107725991,LOC107658884)


Basic Information

Item Value
gene id G61873
gene name LOC108425386,LOC107710121,LOC107656362,LOC107725991,LOC107658884
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4339686 ~ 4363028 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83490
aagggttaaaagttGATGAGAGCTAAGCAGttattgtttctttatttttccaaaaaacaaTCTAAAACAAATAGCTTTCAGTCTATCAGTCTTAAGGTAAATTCTGTCCTAGTCCAGGCTTTGACTGTCCGGACCTGGTTGACTAGGAACTGACCTTCAAGGAGGATCCCCTGGGGCTCACACAAACAAAGGGTTTCCTGGTGTCTCCGTCCACTTCCTCCCCAACCTTCTGCCTCCGCTCTGCTGCTTCTGCTCTTCTCCTCTCGATCTCCTCCTTCAtccttctcttctcctcCTCCTCTTTAGCCTTCCTCTCAGCCTCCTCTTGCTTCTTattcttctcctcttcttccagcaccttcctcctctcctctctcttcctcttcagcTCCTCCAGCTCGGCCTCTGCCTCCTGCTGCTTCTGCCTCATCCTCTCAAACTCCTCGATCTCCGTCTCGTCTCTCCTCCGCTTCAGCTCCTCCAGCTTCCGCTCTGCCTCCAGACGAGCTCCCTCCCCGTCCTGATCCTCCGCTGTCGGGACCTCGGGAGAGCGTAGGCTGCCACGGCT
>TU83491
GATTTGCTCTCTCCTCTGCTTGTCacctgagagagggagagagagagaaagagagggtgagaaaaagagggagagagaaaaagattcAGTGGAATAGAAATGGTTCTTAACATGCAGTACCCAAAAAGCTCCTAGCTAGTGAAAGAGTGGAAAGCTAAACACAGAAAAAgcttttttcttgtcttttacTTCTTCCCTCATATTGTCTAtgttgtattaaataaaaatgaatataaacctCCATGTACATGTACACACACCCTCAGAGGGGCAAAAGGTGGCCGTGCAAACTCCCAATAAGCAAGACCACAGAGTGTGGTCTCTGGATTCATATCCAAACTTATTTTCCATTCCCCCACACTCTGCTGACCGCTCAGATCCCCACCCCCACGCAGCCAGGCTTGTATTTTGTACCATAAGTGTGGCCATAACCACGGCTTTCCCTTCATTAGCCCCTCATTACGTCAGCATTAGCCACAGTGCAGAGTGTGGCTAACCGCGCGGCCTTGGCCTGACCTTAACATGGCCGCAGCATGCCGGCGCTGCTTCTCACCGGCCTGGAGTCTGCCAAAGATAGAGCTGTCCAGATGAATATCGCTGCTGTCCTGCTTTATCAGAGCAACAACATCCCTGAACAAACATGTGTTTGCTCGCAGGAGGCGCAGGGCTGCGGGGCATGCCTTTTCAGTTTCAGCGGAGTGGATACAGGCTGATGATAGCTGTTGGATTGGCTGCTGTTCAGGATATGTGTgaaagtgtggtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgtgtgtttgcATGGAAGCCAAATACAACTGCGAGAGGTTATAAAAATAGATCCAGAGAACAATCTGTgagcagtgtgtagtgtgtgtctgtgtttagtgtgtgagtgtgtaagagaaGAAAGTGTCCATTTATCCAGGTCTGTGAACAGATGTTGCTGACCTTGTTGCTGGACGGTGTCCCGGGGCCAGAGCCGAAGACATTTCCCTTCTCCCACATGCTCTTGATGTTCCGAATGCCATCAGTGACCATGGGCAGGTCAATAGCGCCGGACCGTGGCGAGCGTGCGTCCTTAttagtCTGCACAGCACTGGTGTACTGCTCCAATCTGTTGTCAATCTTTGACACCACAGGAGAGTGAGACGTCTTCACACCACTTTTCTGTGCTGACTTGTTGAGGAATTCTGCTCTTTCACCAATCTTCAAGGAGGATCCCCTGGGGCTCACACAAACAAAGGGTTTCCTGGTGTCTCCGTCCACTTCCTCCCCAACCTTCTGCCTCCGCTCTGCTGCTTCTGCTCTTCTCCTCTCGATCTCCTCCTTCAtccttctcttctcctcCTCCTCTTTAGCCTTCCTCTCAGCCTCCTCTTGCTTCTTattcttctcctcttcttccagcaccttcctcctctcctctctcttcctcttcagcTCCTCCAGCTCGGCCTCTGCCTCCTGCTGCTTCTGCCTCATCCTCTCAAACTCCTCGATCTCCGTCTCGTCTCTCCTCCGCTTCAGCTCCTCCAGCTTCCGCTCTGCCTCCAGACGAGCTCCCTCCCCGTCCTGATCCTCCGCTGTCGGGACCTCGGGAGAGCGTAGGCTGCCACGGCTCGTGGTTCTCTCCACCTTCTTGTGCTTGCTGTCCTCATACACTCCTCCATTCTGCTGCTTGCTCTTCCTCCCCACGTTTTCGTCCTCCATCTGTGCCCTCAGGTAAGACCTCCGCGGCTTCTCCTCCATCACTTCCTCCACTTtctgctcttcctcctcctcctcttctgctgcagcctcctcttcctcctcctccttggCCTCCTCATTCTCCTGCTCCTTGCTGTTGAGTGCAGGCTGCTCCTCCTGCTCGTGGTAGTGATAGCGGCGGCTGCTGGAGCGCTCCTCCGTGCTGTAGTGAGTGGAGTCGGGGGAATCCGTGTCCTTCTGTCTGTCCAGCGCCTCCTTCATCCTCTTCTGCCGGCGCTCCTCGCGCTTGGCGAGGCGATCTAGCAGGGCCTGCTCCTCATCGTCGTCTTCACCTGCCTGGCTAGAGCTGACCACTGAGCTGGACACCGTCTCTGTAACAGTCACACtg
>TU83495
TTTTGTGAATCCTGCCCCAGATTTGGGGGCAAAGCCTTTTGCTACCATAAACACCGTAATCTCCTTTACATATGCAAATTTTGGCAATGCATCCTATTACTATTTAGGCCTAATCAGCTGTTCTCCGAGACGAAGCCCCCAAAGCTTTAGTTATCCATCTCCTGCGAGCATCTGGCCTCTTACCAAACCTAAATCATTGCTTGtaaactctctctctgcttcctgAGACACAGCTGTCTCCTGATTTTCATCATCTGCATTCTCCTCGAGCTCCTCTAACTCATCCTCCTCTCCTTCCTCTACATCCTCATTCACTCCTGCTGTGTCCTCGTCCACGTCTGGCTTTGAGCAGACTGTGGAATCAGCTGTGTCTTCATTTACATTCTCACACTTTTCACTTGCAGCCTCCTGCTCAGTGCTGCCCTGTGCCCTCAGGTAAGACCTCCGCGGCTTCTCCTCCATCACTTCCTCCACTTtctgctcttcctcctcctcctcttctgctgcagcctcctcttcctcctcctccttggCCTCCTCATTCTCCTGCTCCTTGCTGTTGAGTGCAGGCTGCTCCTCCTGCTCGTGGTAGTGATAGCGGCGGCTGCTGGAGCGCTCCTCCGTGCTGTAGTGAGTGGAGTCGGGGGAATCCGTGTCCTTCTGTCTGTCCAGCGCCTCCTTCATCCTCTTCTGCCGGCGCTCCTCGCGCTTGGCGAGGCGATCTAGCAGGGCCTGCTCCTCATCGTCGTCTTCACCTGCCTGGCTAGAGCTGACCACTGAGCTGGACACCGTCTCTGTAACAGTCACACtg

Function

NR:

description
PREDICTED: non-muscle caldesmon-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83490 False 568 lncRNA 0.53 2 4350990 4357002
TU83491 True 2114 lncRNA 0.53 8 4339686 4363028
TU83495 False 811 lncRNA 0.54 2 4360451 4363028

Neighbor

gene id symbol gene type direction distance location
mcm10 NA coding upstream 240297 4083683 ~ 4099389 (+)
LOC103027723 ppara coding upstream 265123 4048242 ~ 4074563 (+)
atxn10 atxn10 coding upstream 370730 3956662 ~ 3968956 (+)
LOC103029111 NA coding upstream 389952 3937491 ~ 3949734 (+)
LOC103031106 LOC108438797 coding upstream 485959 3847043 ~ 3853727 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding downstream 312331 4675359 ~ 4701435 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding downstream 888105 5251133 ~ 5261551 (+)
LOC107197570 LOC108442310 coding downstream 1058740 5421768 ~ 5423304 (+)
LOC111192904 NA coding downstream 1649818 6012846 ~ 6015114 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding downstream 1853783 6216811 ~ 6334340 (+)
LOC111192934 LOC108425385,LOC108279691,LOC107710083 non-coding upstream 14652 4319852 ~ 4325034 (+)
G61852 NA non-coding upstream 195995 4143061 ~ 4143691 (+)
G61786 NA non-coding upstream 202915 4131763 ~ 4136771 (+)
G61790 NA non-coding upstream 208596 4130317 ~ 4131090 (+)
G61815 NA non-coding upstream 216723 4122682 ~ 4122963 (+)
G61914 NA non-coding downstream 165059 4528087 ~ 4561876 (+)
G61929 NA non-coding downstream 233023 4596051 ~ 4596262 (+)
G61996 NA non-coding downstream 406909 4769937 ~ 4770173 (+)
G61999 NA non-coding downstream 432694 4795722 ~ 4796011 (+)
G62004 NA non-coding downstream 472244 4835272 ~ 4835472 (+)
G61575 NA other upstream 1035688 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 2404187 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 2530756 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 2858268 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 3296370 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 1377527 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 1419063 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 1619208 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 2488202 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 4038812 8401840 ~ 8415039 (+)

Expression


Co-expression Network