G62004


Basic Information

Item Value
gene id G62004
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4835272 ~ 4835472 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83638
tttatctttgacagtgttgtgtaaactaagatttttcaaattgatgtttaatttcatgatgtctcttaatataaaactccttaattacggcaacttttagactctttggcccgtttttctgcgctagaaatgtgcactctctccgcttttagactctttggcccatttttctgcgctagaaatgtgcactctctccgcttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83638 True 201 lncRNA 0.37 1 4835272 4835472

Neighbor

gene id symbol gene type direction distance location
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding upstream 133837 4675359 ~ 4701435 (+)
mcm10 NA coding upstream 735883 4083683 ~ 4099389 (+)
LOC103027723 ppara coding upstream 760709 4048242 ~ 4074563 (+)
atxn10 atxn10 coding upstream 866316 3956662 ~ 3968956 (+)
LOC103029111 NA coding upstream 885538 3937491 ~ 3949734 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding downstream 415661 5251133 ~ 5261551 (+)
LOC107197570 LOC108442310 coding downstream 586296 5421768 ~ 5423304 (+)
LOC111192904 NA coding downstream 1177374 6012846 ~ 6015114 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding downstream 1381339 6216811 ~ 6334340 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding downstream 1574445 6409917 ~ 6426277 (+)
G61999 NA non-coding upstream 39261 4795722 ~ 4796011 (+)
G61996 NA non-coding upstream 65099 4769937 ~ 4770173 (+)
G61929 NA non-coding upstream 239010 4596051 ~ 4596262 (+)
G61914 NA non-coding upstream 273396 4528087 ~ 4561876 (+)
G61873 LOC108425386,LOC107710121,LOC107656362,LOC107725991,LOC107658884 non-coding upstream 472244 4339686 ~ 4363028 (+)
G62030 NA non-coding downstream 151950 4987422 ~ 4987718 (+)
G62036 dock4,LOC108425388 non-coding downstream 163769 4999241 ~ 5002904 (+)
G62069 LOC103042505,LOC108425390,LOC108280006 non-coding downstream 476433 5311905 ~ 5315202 (+)
G62086 NA non-coding downstream 525073 5360545 ~ 5360785 (+)
G62098 NA non-coding downstream 596604 5432076 ~ 5432368 (+)
G61575 NA other upstream 1531274 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 2899773 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 3026342 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 3353854 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 3791956 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 905083 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 946619 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 1146764 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 2015758 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 3566368 8401840 ~ 8415039 (+)

Expression


Co-expression Network