G62036 (dock4,LOC108425388)


Basic Information

Item Value
gene id G62036
gene name dock4,LOC108425388
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4999241 ~ 5002904 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83673
ggctgaattcatttttaattttattacacaGGAAATCATTAGAATGTAAATGTGTTAGATGCATTTCAGCTGGACCTTATTCTTTCTaaaatccccccaaaaaacataaatatttaacatttataattataatttgttGTTCCAACATTCAAAGCTGTAAATTTGTTATAGCTACACTTTctgttaaaaacacagtatgtACAATAGACAAGGTATCGTATTTGGCATACTTACAACAATGTCCTTATTATATCATTTACAATATTCTCAAGTACTGATTCTTGTGAACGTCTGTCCAAAATTCACAACTGGTCCTAGTTggggggaggaaaaaaaagtaacttacaAAAGATGACCATAGATACAATGACTCAAGATAATGTGATCAGAAATGAAATGCAACAAAAATGTAGAATGCAGAATGTAGATTGATGTGATCAATATTATTctcttttaatgtttaaaacacaataataccTGATGAGCTGTTATTATTAGAATGATTctgattttgatttatttaacgTGTAATTTGAAGGTATTAGAGGCTCTGATCACTCATTTCATcaataatacacacatttacacacagtatATGGCTGATATACTGCTGTAATACAGTGTGAAGcgagtatgtatgtgtgtaacgAGCATGCAGTGTTATTAATTGTGAGAGTTGGGCTGTGAGACTAGAGAATGTACAGACTGTATTATACTTGAATTGTGCCAGCTAATATACTTTCTGATGCGTAACTATATCTGCGAATGTATGAAGGcagtaaaaaaagagataaaggcAGTAAATGAACAGAATATTAGCTGTGCATTTGTTTCTATATCAAACGTAACTGTACAATGTCAGCATGCTGTATAATTCAGTGTGTTGTACATCGTGACAGATCAGTACATCGGCATATTGTCATGACTATGCTATAACTGTGTCccaaagcctaggctgcagcTGAGGTTGTTTGACTACTATGATGTCATGGAAGGCTGTTCTCAcagctgagaaatgcagcctatttttttttagagcaatCTCAAGTATTAATAATTATAGTTTTTCTAATGTTTTCCaaattttctccacaatttaccaACATCACACTAGGAGGGATGTgaagagagagtgccatctacccacaaagttatccaaaagcagtgtgtaagactggtggaggagaacatgcaaagatgcatgaaaactgattaaaaaccagggttattccaccaaatattcatatttctgaactcttaaaactttatgaatgttaacgtgttttttaatttcagccatttctcattttctgcaaataaatgctctaatatttatttttataatttgggagaaatgttgtctgtagtttacagaataaaacatttttttcaaatataaacctataaatagcaaaatcagacctgattcagaaactgaagtggtctcttaatttttttttcagagctgtataaaacaaCTAGGCTTCTTATAATGAAGTTTTCATAGGACAGTCCTACAGAGAACCTGCGCTACCTCGACTGCTGTCCAGGCTTTGGAGCACGCTGTACTAAATCGCTAAATTGTTTTAGAGCCCTTCAAATCAACATATGAACCGTTACCTACATTGTTACTGacaataaaaaatgagaatGGGATGTGGTAACACATGGCAACACACATTGTGGCAGATGTGATTGGTCAACGAAAGAACAAAGATTCTGGATGGGAATGGCAGGCCTTATGCCTGTAACAGCTCCAGCAGTCTCAGAATGGTTAACACATAGTTATCATAGACACTGTATGCTGAACCTTCTGCAGCTTCCTtctagtatatattatataatgtggTGTGTCCATCATGTGGTGTAACTCCTGGGTACTATCCTTGTCAAAGGCAGTGATGCTACTAACATCTTCATTTGTGCTTCATCTCCATTGCCTTTCGGAAAGCCATCCCCAAAAGGCAGGGTACAAACAGCATCTGGCAAACAGTGTGACTGCCGTCATGTTCTCCTGGCTCGAGTCTGTACGTCACCTTGGCACAAAACTTGGCAGAAGAACCAACAGATTCAGTTCTGAAAGGTTTTCCAGGCCACTTTCATAATCAGCATTTTCTGCCAAAAGCATGTAAACTACAAACAGCTCCAAGTACATCCGTACAGAACAAGCCAGCATCCAGCTTTACCAGCTTTTCCCTGTGGGTGGGACCATGATCATGACCATTACTGCTGGGTGTTAGTAGATTCAAAAGACGAATGTCAGTTGGGAATCATTTTTCTCTCAAATTGCCTCTTTAGTATCTTCAGATGAACTTCAGAAGGAAGCCTAGAGGAGCATGATGGCATCTGGTTTTGTGATGGACTGATGCAAGATGAATAAAACTGGATAAAAATTGAAATGTGGTAAACTGGCCACCTCAGAGCAGCACCTTCATGATTGTGTCTGTGAAATAGCGTGTTGTATAACATCCAGGTGTGTACAGGATTAGAGCAAAGAACCAAGCAGCCATAGAATGCAGGCTGCTAGCACCTTTTGCGGCATTTTAGAAAAAAGTACAGCGTACTTAAAAACGTGCATTACCCATCAATAAAAGATTCTGTTTTCAATACGTAAGGCATAAAACTTCAAttgtcatattaatatttacactTCATGGAAATAATACGTCTACCAAATACTAAGACAATGCCCCGGTGGTTGTTTTCTGACGTGTGAAGCTTGTGTTCTTATGTCCTAagaccttaaaaataaaaaaaaagaaagaaaaaaaaaagtgcaggaCGTTGCAGGACGTCAGTCGTGCCCCTGCAAGACCCTCCTCTACTACCCCACAGTCTGACGTTTGGCTGACGGTTGGGCTAGTGACCCGGCGAGAGAGGGAGCGAAAGTGCAAGTGGTATAGGGGTGCGGTTTCGATCCCAGCAGTCCGGCTAGAGCTGAGAGACTTTTCTGGGAAGTGGCCTCGGTCTCGGCACCTGTTCAAGGCGCCGCGGGTCCACGTCCGGCTTGCCGCTGCGGAGCTGGTGCGGTTTTGGAGGTATGGGCGGGGCATCGGTGCTGGGAGGAGGGATGGACAGGCTGTGGGGGAGGGGGACGGGCCGTCGAGGGTTGTTGCGCTCGTATACGCTGTAAGGGGGCGGGGTTTTGTTCTCTCTGCGGAAGAGCTCGTCCGAGCCGCTGGAGGCCGAGGTGGGGAGGGCGTGGTCGGAGGCCGGGGCCTCAGTGCCGGATGCCTCGGAGACACTGCAGCGGCTGAGGGAGGAGATGCCGCTGCTGTAGCTGCCCGACAGGACCGGGGAGTTGGCAACGAGCCCCGCAGACTGGCACTCCGTGGGTGAGGGGGTGAATGGAG

Function

symbol description
dock4 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be located in cytoplasm. Orthologous to human DOCK4 (dedicator of cytokinesis 4).

NR:

description
PREDICTED: dedicator of cytokinesis protein 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83673 True 3353 lncRNA 0.42 2 4999241 5002904

Neighbor

gene id symbol gene type direction distance location
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding upstream 297806 4675359 ~ 4701435 (+)
mcm10 NA coding upstream 899852 4083683 ~ 4099389 (+)
LOC103027723 ppara coding upstream 924678 4048242 ~ 4074563 (+)
atxn10 atxn10 coding upstream 1030285 3956662 ~ 3968956 (+)
LOC103029111 NA coding upstream 1049507 3937491 ~ 3949734 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding downstream 248229 5251133 ~ 5261551 (+)
LOC107197570 LOC108442310 coding downstream 418864 5421768 ~ 5423304 (+)
LOC111192904 NA coding downstream 1009942 6012846 ~ 6015114 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding downstream 1213907 6216811 ~ 6334340 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding downstream 1407013 6409917 ~ 6426277 (+)
G62030 NA non-coding upstream 11523 4987422 ~ 4987718 (+)
G62004 NA non-coding upstream 163769 4835272 ~ 4835472 (+)
G61999 NA non-coding upstream 203230 4795722 ~ 4796011 (+)
G61996 NA non-coding upstream 229068 4769937 ~ 4770173 (+)
G61929 NA non-coding upstream 402979 4596051 ~ 4596262 (+)
G62069 LOC103042505,LOC108425390,LOC108280006 non-coding downstream 309001 5311905 ~ 5315202 (+)
G62086 NA non-coding downstream 357641 5360545 ~ 5360785 (+)
G62098 NA non-coding downstream 429172 5432076 ~ 5432368 (+)
G62103 NA non-coding downstream 444924 5447828 ~ 5454163 (+)
G62146 NA non-coding downstream 522874 5525778 ~ 5527065 (+)
G61575 NA other upstream 1695243 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 3063742 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 3190311 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 3517823 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 3955925 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 737651 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 779187 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 979332 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 1848326 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 3398936 8401840 ~ 8415039 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G110576 NA non-coding CM030134.1 CM030134.1 9010140 ~ 9014326 (-)
tiger barb (Puntius tetrazona) G25310 dock4b,LOC107584044,LOC107658732,LOC107656358,LOC107725897 non-coding NC_056702.1 CM032071.1 2288180 ~ 2302399 (+)