G62069 (LOC103042505,LOC108425390,LOC108280006)


Basic Information

Item Value
gene id G62069
gene name LOC103042505,LOC108425390,LOC108280006
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5311905 ~ 5315202 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83707
gGTCAAACAAGGACGAATAAGTTCGACAACGTGCCACAACCTGTACAAAGCTTGTCtatttctgtaaaataaaagaaaaaaagaaaagaaaaacacttcttATGTAACGGCACTGTCCCAGAGAGATGGCCTGTACCCAGTGCTAAAGTGCACTCACTCATGCGGTATCCTCCAGAGGAACAGAGGGTCAGCCTGTGCTGGCCTCCTCTACTCACTGCACACCACGAACCAATCACATCTCTGTGGCAGCTACTGTTTTGCTAAATGTGTGTCATCCCCGAGGCAGAAATAGGCCTCATAAATGATCATTTTCAGTCACCTACCCTTCATACGAAACAAGGCACTTGGAACTCAATAAATTGCCACTTTACCTCTTTATACAGTCAAATGAACACACATATAGCCTCGGGCACTTAAAGCCAGGCGCTGAGGAGACTGACTACCTTTTGACATAGATATGATGATATTGGCATCACTAGGACTGATGGTTAACATTAGACTCaatgaacatgttttatttgtagatccaaatttcaataaaaggtttaatataaacataacaAATTCCACCAACATACCAttagtcatgggacaggaacttgTACCATTTAAATAACGCTGCAATGTTGATTGTCTTTTCACATGGACTgtaattctagccagacactgctggtcacaatcattaccacccactgcactgtccacaaTTTCTAAAAATCAGCCCTCACTcaaaaactactactactattgataataatataataacttgTATTGCATTGCATTTTAAGAAAGCCATGCtagccagtgtttaacctcactcacaagagaGCACCTCACAACTCATACAGGTGTGGGCGCTCCAAAGCTGTCTCCAGCGGTAACACTCCATGAACCAATTTACATActtctatcccatgacttttggcatgtcagtgtattttgtTCCCAAGAAGTGGAAACATTTAATGCCATGCATGTGTAATCActaatgcaaatgaactaaactaaactgcttgaatttttgcaccagtaaaggcaaaaaaaaacacactccaaaagcagtgtgtaagactggtggaggagaacatgccaagatgcatgaaaactgtgattaaaaaccagggttattccatgtaacatatacctataaatagcaaaatcagacaagctgattcagaaagtgaccactaaagtggtctctttcatttttccaaggctgtatataaacatatattgcATAGAGGACATAATGTTTACTTTTCACAGTAATTGGTTGCTAAACTCGATCATAAGATCTATGATCTTTAGTATATCGTTGTCTTAACACAAACACATCGAATTAtaactttacagaaaaaaagggaaataaaaagtcaatgtaaatattttattccaagtaattttggtgcatttctattgaactattaattattaaatttatgATATGATTTAAAGAAGATCTGTCAGTTTCAAATTAtgtcaaaaaaagtaaaaaaaaaattgggatacaagatgacaatgcatgaCAAAAACAATTAGTACCTAAAAATCccaaatattgcaaaatattgGCCATGGCAACAGTGAACATAGGCAGCCATTAGCAAAGGCCCAGAATTTGTCTAATAAGTTGACTTACTGTGTAAAAAAGCCACAGTGGATTACTTGGCTATGCAGAGACGGCAGAATTTGGCCATGAAGATCACAGTGACCTTCAGAATTCATGGCTCTCCACTGAGGCTCCAACTTCTAAGAACCCAAAGGCACAGCTAAATGATGAGCACTTAAACCACCAAAAAACAGGAGAAGGCACAGAAAGTAAggcatataccgtatttttcgcacaatAGGGCGCACCTCAAATCCTTtgattttcctaaaaatcgtcagtgcgtcttataatctggtgtgctttatgtattcattttaccagtcaggttgtagggagcagtaaagccactccgctaaagtgcagcattatagttttagttctatagtttagttctccagcaccgagacccgagactggagcagtattagagaagtattagcattagctgctaaccgcgctagctcttttgctgcttAGAAaagagtattattggcctgtagcctgcttctaacctcggctagcactgctggagcatcattagcattatctgctaaccgtgctaagtgctagttagctctttcgtcattcggaggtgagtatatcggactgtagccttcccgtttactgtgttaaaacaagctacgtcgGACGatccgctagctaatattgccatGGGGTTAccagagcactcagggttcctcagtgtaggtCTGTCTGGCTAGCctaagtggaaatctggaaatctaagcttactgtagataaacagaagcgcttcaCTCTCCCaaatgaaaaatctgaaaaatctgtgtagattaacatcaaaCACTTGGTtgacttaaaaaataatgtgccctataatctggtgcatgttgtgtatgaaaatagacaagaaaataaacatttaaataaacatagtgtgccttatagtgcgaaaaatacggtatgctaataaaaaaatacagcatattACAGCATTCAAGTCTTTGCTTGTGTCTACGATCGCACCAGTTTGATTCCCTGTCCTGTGTCCAGGATGGTGGGAGGAAACCAGGCCAGTTTGAATCTCCTGAAGCAGCGTAGGCAGGCTCCGCACAGCCACAGCAAGTTCAGCCCACAGCACCAGTTGGCAACAGCCACCAGCGGGAAGGTGGCCCTGGGGAAATGGGTTTTCCAGTGCTTTTCTACGTCGTTGCCAGTGGGCAGGTGGAGCCTGTAGTCACTCCAGCACTTAGACACGCCGTACGTAGCAGCGATAAGCCGACCTCTCTCTGACCACTGCACGCTGCTGTCGGGATCGCAGTTATACTCCACCCACTCGGAGGTGAAATCTCCTAGACGAGGCCCGTCTTGGCTCTCGGCATCTCCCACTGGACTCATCTCTGCTCCCTGAACTGCTACATACAGGCCCTCCACCCTCCTCGCTGCCTTTACCCAAGGCACTGAGTGGTTCGTATCCAGAATCAAGATGAGTCGAGAGGAGAAGCCAACGTTCCGTTCTCTCCACAAATCAATGAGCTGCTCCAGACGCAGACAATCCC

Function

NR:

description
transmembrane protein 168-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83707 True 3150 lncRNA 0.42 2 5311905 5315202

Neighbor

gene id symbol gene type direction distance location
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding upstream 50354 5251133 ~ 5261551 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding upstream 610470 4675359 ~ 4701435 (+)
mcm10 NA coding upstream 1212516 4083683 ~ 4099389 (+)
LOC103027723 ppara coding upstream 1237342 4048242 ~ 4074563 (+)
atxn10 atxn10 coding upstream 1342949 3956662 ~ 3968956 (+)
LOC107197570 LOC108442310 coding downstream 106566 5421768 ~ 5423304 (+)
LOC111192904 NA coding downstream 697644 6012846 ~ 6015114 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding downstream 901609 6216811 ~ 6334340 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding downstream 1094715 6409917 ~ 6426277 (+)
pus7l NA coding downstream 1112804 6428006 ~ 6441574 (+)
G62036 dock4,LOC108425388 non-coding upstream 309001 4999241 ~ 5002904 (+)
G62030 NA non-coding upstream 324187 4987422 ~ 4987718 (+)
G62004 NA non-coding upstream 476433 4835272 ~ 4835472 (+)
G61999 NA non-coding upstream 515894 4795722 ~ 4796011 (+)
G61996 NA non-coding upstream 541732 4769937 ~ 4770173 (+)
G62086 NA non-coding downstream 45343 5360545 ~ 5360785 (+)
G62098 NA non-coding downstream 116874 5432076 ~ 5432368 (+)
G62103 NA non-coding downstream 132626 5447828 ~ 5454163 (+)
G62146 NA non-coding downstream 210576 5525778 ~ 5527065 (+)
G62162 NA non-coding downstream 327458 5642660 ~ 5652784 (+)
G61575 NA other upstream 2007907 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 3376406 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 3502975 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 3830487 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 4268589 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 425353 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 466889 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 667034 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 1536028 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 3086638 8401840 ~ 8415039 (+)

Expression


Co-expression Network