G62146


Basic Information

Item Value
gene id G62146
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5525778 ~ 5527065 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83802
GCTCCGCGTAGGTTCTAGCGGGAAACTCGAAATCACGccacttttctcagccaatcaccaactcccacctgtccttaaaagacctccctcatacctgttctcccctgcttgcagacgcTGACATACGTTTTCGGGCGCCGGTCGTTGCCGCGTGGCTTCATGGTGTTTCTGCCATTTGTCATTGCCTGCTCTCAGTTTGCCGTTTTCGCCCGTCTGCGTGGCTGCTCGTTCGTAGTTGGCTCGATTTCCTGCTCGTAGGATCCATGTTGGTTTGTATTGCTCTCTGTTCTGTCGCTGGCGTTTTGGTTGGATCCTCGCTGTGTTTGCTGTTGGCGGTCTGGGTTCCTGTTTTGCTGGATCACGTGACCGTGTCGCGCTTGCCTTCGAGGCTTGCTGCTCCGATGCTTTGTCTCGGCTCGCAGCCGTGTGCTGAATCGTTCTGGTCTAGTGCTGAGGCTTTTCTCGGCGGTGTTCGGATAGTTGCTTGGTGTTTCTGCGTTTTCCACGGCTCTGTCCGGTGCCTGTGGCTGAGTTTGTACGCTTCGCTCGAGAAGTCTGGGCTGGATGGCTGTTTTTAAACCCGCTCCTGCTGGCACCCGATAGTTTTAGCCCCGCGCCCGCCCTCCGTTTTTTACGTTTCTGCCGCTCCGCACGCCTGCTTGTGTTGCTTACGTTTAGTGCTCGAAATTAACTTGGGTTTTTTATTGAACCAGCAATGTGGCGCTGATAGCCTGCTCCCTTCCtactgtccacacacacacgcccacgCCTCAGTGGAGCTGACCCTTCAGGCACTGCTTGCAAAGTGTTTCGTTCATGCAGCACCAAAACCTAATTTGATCGATGATAAATAAACTTAGTGTACTTGGTTAATCCTCGTTCGTTGTGATCTCATTCTCGCGACGCTCCTATGGTTCGTTTATCGGTCTTGGGCTTTACTGTTGCTGAATGTTATTGATGTGTCGTTCGCGATCGATCCGGCTCAGGAGCCGACTCTTCGAAGTCACCTATTGGAACCGGCTCTATTATGGGTGCCGTTTTCTCCATTTTATATACCTTCGTATTTTACACATTAATTTAGAAGCACTGTATTTGATATTTGTATTGTGgcactttttttgttataaagcATTGTTATGCAGCTGTTTTGCTCGTCGCAAGTGCCTATTGCGCTGCTTCTTATCTCGGACCGTACCCGTTCAATTGCTTTTCTGTACTCGCTTCCGTGCTGCTTATTGTCTCGGGCCgtgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83802 True 1252 lncRNA 0.51 2 5525778 5527065

Neighbor

gene id symbol gene type direction distance location
LOC107197570 LOC108442310 coding upstream 102474 5421768 ~ 5423304 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding upstream 264227 5251133 ~ 5261551 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding upstream 824343 4675359 ~ 4701435 (+)
mcm10 NA coding upstream 1426389 4083683 ~ 4099389 (+)
LOC103027723 ppara coding upstream 1451215 4048242 ~ 4074563 (+)
LOC111192904 NA coding downstream 485781 6012846 ~ 6015114 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding downstream 689746 6216811 ~ 6334340 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding downstream 882852 6409917 ~ 6426277 (+)
pus7l NA coding downstream 900941 6428006 ~ 6441574 (+)
LOC103021937 LOC108439409 coding downstream 1074318 6601383 ~ 6632805 (+)
G62103 NA non-coding upstream 71615 5447828 ~ 5454163 (+)
G62098 NA non-coding upstream 93410 5432076 ~ 5432368 (+)
G62086 NA non-coding upstream 164993 5360545 ~ 5360785 (+)
G62069 LOC103042505,LOC108425390,LOC108280006 non-coding upstream 210576 5311905 ~ 5315202 (+)
G62036 dock4,LOC108425388 non-coding upstream 522874 4999241 ~ 5002904 (+)
G62162 NA non-coding downstream 115595 5642660 ~ 5652784 (+)
G62174 NA non-coding downstream 167332 5694397 ~ 5698893 (+)
G62224 NA non-coding downstream 252630 5779695 ~ 5780084 (+)
G62258 NA non-coding downstream 470943 5998008 ~ 5998229 (+)
G62276 NA non-coding downstream 507102 6034167 ~ 6040514 (+)
G61575 NA other upstream 2221780 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 3590279 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 3716848 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 4044360 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 4482462 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 213490 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 255026 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 455171 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 1324165 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 2874775 8401840 ~ 8415039 (+)

Expression


Co-expression Network