G62147


Basic Information

Item Value
gene id G62147
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5525793 ~ 5526860 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83804
ATGGAGAAAACGGCACCCATAATAGAGCCGGTTCCAATAGGTGACTTCGAAGAGTCGGCTCCTGAGCCGGATCGATCGCGAACGACACATCAATAACATTCAGCAACAGTAAAGCCCAAGACCGATAAACGAACCATAGGAGCGTCGCGAGAATGAGATCACAACGAACGAGGATTAACCAAGTACACTAAGTTTATTTATCATCGATCAAATTAGGTTTTGGTGCTGCATGAACGAAACACTTTGCAAGCAGTGCCTGAAGGGTCAGCTCCACTGAGGcgtgggcgtgtgtgtgtggacagtaGGAAGGGAGCAGGCTATCAGCGCCACATTGCTGGTTCAATAAAAAACCCAAGTTAATTTCGAGCACTAAACGTAAGCAACACAAGCAGGCGTGCGGAGCGGCAGAAACGTAAAAAACGGAGGGCGGGCGCGGGGCTAAAACTATCGGGTGCCAGCAGGAGCGGGTTTAAAAACAGCCATCCAGCCCAGACTTCTCGAGCGAAGCGTACAAACTCAGCCACAGGCACCGGACAGAGCCGTGGAAAACGCAGAAACACCAAGCAACTATCCGAACACCGCCGAGAAAAGCCTCAGCACTAGACCAGAACGATTCAGCACACGGCTGCGAGCCGAGACAAAGCATCGGAGCAGCAAGCCTCGAAGGCAAGCGCGACACGGTCACGTGATCCAGCAAAACAGGAACCCAGACCGCCAACAGCAAACACAGCGAGGATCCAACCAAAACGCCAGCGACAGAACAGAGAGCAATACAAACCAACATGGATCCTACGAGCAGGAAATCGAGCCAACTACGAACGAGCAGCCACGCAGACGGGCGAAAACGGCAAACTGAGAGCAGGCAATGACAAATGGCAGAAACACCATGAAGCCACGCGGCAACGACCGGCGCCCGAAAACGTATGTCAgcgtctgcaagcaggggagaacaggtatgagggaggtcttttaaggacaggtgggagttggtgattggctgagaaaagtggCGTGATTTCGAGTTTCCCGCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83804 True 1032 lncRNA 0.53 2 5525793 5526860

Neighbor

gene id symbol gene type direction distance location
LOC103037729 LOC108442307,LOC107676911,LOC107583751 coding downstream 31142 5456709 ~ 5494651 (-)
LOC103042505 LOC103042505,LOC108425390,LOC108280006 coding downstream 189394 5314557 ~ 5336399 (-)
LOC103023194 dock4b,LOC108425388,LOC108279862,LOC107656358 coding downstream 326181 5000950 ~ 5199612 (-)
LOC107197701 zgc:101560,LOC108425328,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC107658770,LOC107584059 coding downstream 1064268 4447876 ~ 4461525 (-)
LOC103040249 tnnt2e,LOC108425385,LOC108279691,LOC107658902 coding downstream 1191781 4318440 ~ 4334012 (-)
cmas NA coding upstream 117649 5644509 ~ 5653023 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 coding upstream 131588 5658448 ~ 5663281 (-)
abcc9 abcc9,LOC108439416 coding upstream 138041 5664901 ~ 5726283 (-)
nuak1 nuak1,nuak1a,LOC108439414,LOC107587153,LOC107729860,LOC107690659,LOC107582835 coding upstream 569480 6096340 ~ 6119766 (-)
LOC103029290 prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933 coding upstream 613102 6139962 ~ 6144208 (-)
G62127 NA non-coding downstream 73536 5445563 ~ 5452257 (-)
G62125 NA non-coding downstream 75516 5443582 ~ 5450277 (-)
G62121 NA non-coding downstream 93405 5432090 ~ 5432388 (-)
G62089 NA non-coding downstream 126604 5398954 ~ 5399189 (-)
G62087 NA non-coding downstream 164999 5360545 ~ 5360794 (-)
G62150 NA non-coding upstream 1836 5528696 ~ 5530196 (-)
G62210 NA non-coding upstream 204168 5731028 ~ 5732187 (-)
G62217 NA non-coding upstream 232603 5759463 ~ 5761833 (-)
G62237 NA non-coding upstream 401632 5928492 ~ 5967717 (-)
G62244 plxnb2a,LOC108439415,LOC108279839,LOC107587155,LOC107725571 non-coding upstream 421338 5948198 ~ 5950005 (-)
G61942 NA other downstream 903216 4622213 ~ 4622577 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other downstream 1099637 4335118 ~ 4426156 (-)
cdpf1 cdpf1,LOC107695897 other downstream 1679324 3840601 ~ 3846469 (-)
G61676 NA other downstream 1867525 3650845 ~ 3658268 (-)
mdm1 NA other downstream 1977091 3529520 ~ 3548702 (-)
G62377 NA other upstream 847609 6374469 ~ 6374980 (-)
pphln1 pphln1,LOC108279830 other upstream 1106150 6633010 ~ 6695389 (-)
G62484 NA other upstream 1144750 6671610 ~ 6737948 (-)
LOC111192938 NA other upstream 1201014 6727874 ~ 6733125 (-)
LOC111192940 NA other upstream 1260482 6787342 ~ 6859670 (-)

Expression


Co-expression Network