G62150


Basic Information

Item Value
gene id G62150
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5528696 ~ 5530196 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83808
agagcgggcacggcccgcgatcgcagcagcgcggactacgagtccagggttaatagagcgggcacggcccgcgatcgcagcagcgcggactacgagtccaggttaatagagcgggcacggcccgcgatcgcagcagcgcggactacgagtccagtgggtATTAgggcgggcacggcccgagaatTAAACTTTCCATTATCATTGACTGCTAtaacattttactgatgattGTTATTAGACACCTTGTAAGTCATGATGCGAACAAAGCAAATATAACAGGGGAAGCGAAATTAATGTCAAAACAAATGTCAGGAAGCACCAAATGCAGAACCAAGGACAGACTGTCCTTGGAGAACACCCCCAAAACCAAAGGACCAGGGAAATTAACATCAGCACAAACCATAAGACATAAAGCAACGACAAACCGGATCGGATACTTAACATTGAGGCACGGAATTTGCACAGCAGTACGTCAAAGCAACCCGTGATCGGTAAATGCGCAAAACTTCGGCCACTAAAAAAGTTCTAAGGCAATAGCAACCGCTGCCCACGGCGTTGATGAATATGTTAAAACACGGAATCGTAAAAGTAGAATTTCTGCAAGAAAGGTACATGCCAATCATGAAACAAAACATAGCACAGGCAACACAAAATTAACCCAATAAAAGGCAGCAAATCACCAGAATTAGACCAGGTACGGAGTCAGTGCAGTCCACGAATCACGTAATCGAGAACCTGTGCAGTACTGTACATACAAGCAGCATCGGACACGAGTCCAATCAAGCAGCGGAGCGGGCACGGCCTGagacaataaacaacgcggactgcga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83808 True 830 lncRNA 0.49 2 5528696 5530196

Neighbor

gene id symbol gene type direction distance location
LOC103037729 LOC108442307,LOC107676911,LOC107583751 coding downstream 34045 5456709 ~ 5494651 (-)
LOC103042505 LOC103042505,LOC108425390,LOC108280006 coding downstream 192297 5314557 ~ 5336399 (-)
LOC103023194 dock4b,LOC108425388,LOC108279862,LOC107656358 coding downstream 329084 5000950 ~ 5199612 (-)
LOC107197701 zgc:101560,LOC108425328,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC107658770,LOC107584059 coding downstream 1067171 4447876 ~ 4461525 (-)
LOC103040249 tnnt2e,LOC108425385,LOC108279691,LOC107658902 coding downstream 1194684 4318440 ~ 4334012 (-)
cmas NA coding upstream 114313 5644509 ~ 5653023 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 coding upstream 128252 5658448 ~ 5663281 (-)
abcc9 abcc9,LOC108439416 coding upstream 134705 5664901 ~ 5726283 (-)
nuak1 nuak1,nuak1a,LOC108439414,LOC107587153,LOC107729860,LOC107690659,LOC107582835 coding upstream 566144 6096340 ~ 6119766 (-)
LOC103029290 prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933 coding upstream 609766 6139962 ~ 6144208 (-)
G62147 NA non-coding downstream 1836 5525793 ~ 5526860 (-)
G62127 NA non-coding downstream 76439 5445563 ~ 5452257 (-)
G62125 NA non-coding downstream 78419 5443582 ~ 5450277 (-)
G62121 NA non-coding downstream 96308 5432090 ~ 5432388 (-)
G62089 NA non-coding downstream 129507 5398954 ~ 5399189 (-)
G62210 NA non-coding upstream 200832 5731028 ~ 5732187 (-)
G62217 NA non-coding upstream 229267 5759463 ~ 5761833 (-)
G62237 NA non-coding upstream 398296 5928492 ~ 5967717 (-)
G62244 plxnb2a,LOC108439415,LOC108279839,LOC107587155,LOC107725571 non-coding upstream 418002 5948198 ~ 5950005 (-)
G62272 NA non-coding upstream 483808 6014004 ~ 6015703 (-)
G61942 NA other downstream 906119 4622213 ~ 4622577 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other downstream 1102540 4335118 ~ 4426156 (-)
cdpf1 cdpf1,LOC107695897 other downstream 1682227 3840601 ~ 3846469 (-)
G61676 NA other downstream 1870428 3650845 ~ 3658268 (-)
mdm1 NA other downstream 1979994 3529520 ~ 3548702 (-)
G62377 NA other upstream 844273 6374469 ~ 6374980 (-)
pphln1 pphln1,LOC108279830 other upstream 1102814 6633010 ~ 6695389 (-)
G62484 NA other upstream 1141414 6671610 ~ 6737948 (-)
LOC111192938 NA other upstream 1197678 6727874 ~ 6733125 (-)
LOC111192940 NA other upstream 1257146 6787342 ~ 6859670 (-)

Expression


Co-expression Network