G62162


Basic Information

Item Value
gene id G62162
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5642660 ~ 5652784 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83846
AACAATGTACAGAGGATTATTCAGAACCTATttgaccttaatttcttaattcctTCAATTTTAGTACCTAATACACTTTTCATTAATGTTTATAACAAAGTTAAAATTTGCATAATTGCAATAAAACGCTTCTGTAACTTTTAGTTCCATGTAAGCTTCACATTGGTGACTGTACTTCAGACCGGCACTGGGCACTCTTTTTCAGTTGCAAAATGTGCTCAATGAACTCCCGGAGCGCTCCGTGGCCTGCCCGTGACTGGCATGTGtaattagcagcatttagcaCCACCATAGGGGAGTCCATGGGCACAGCACTTATACCGGCCAGGTTCAAGCAGTCCACATCTGGCACATCATTTcCTAGATAAGCCACCTCTTTCCACCCCAGATTCTTCTCCACTATCAGTCTCTCCACCTCCACTTGCCTTTGCTCTTTAAAATGTCTCAGTTCACATTTTGTTTGCTGGGACAATTTATCTGCCAAGGCCACTGGTATTGGGTTGTCACTGGAGGAGATAAGGATCACCTCCATTCCTTCATTTTTAAGCATGCGGATACCAGCCAAATCCCTGTTGTGAATGGACACCATCTCCAGTCCACCCACAGACATATGGAGCCGTCCATCAGTGAGACAGCCTGACACATTGCACAGAAGCAGCCGCACCAGCTCCGGCTGATCTTTGCCAAAGTAACCAAACCTCAGAACTCTTTGTTCCGCTACAGGCCAGTCTATGTCAACATCAATATCAACACTGTACTCAGGCAGCATCTCAAAGTAAGCCATTCTTCCtccCTGCAAAAGTCCATTGCCCACAAGCTCTTTGGTGGCGAAATAAAAGGATCCATTCTCACAGAGCTCTCCATCCCAGTCTTGGCGTCGGGGTCTCCTCGATGGGTCCAGGTTCAGAGGTTTGGTGAAGGTGTTTTCTCTTTTTTTCACCTCTTGCCAACGGAAGTGATGTCGGCGAACAACAGAGAAGACAGAGTCGTATCCTTGCTCTGTCATCATCTCCACGGCCTGCTTCAGGTGGCATGGGTGAAGGCATGGAGAGGTAGCCTGGATGTTGCAGATTATATCCACATCTGGGTTAAGTCTGGAGAACTCCTGAAGGGTTTCCAGGGAGGTTGATGTGTCTTTGGACACTTCTGGACTCCGTCTGTGTACTTGTGCTCCCCACTTTTTTGCAACCCTCTCAATCTCCTCATGGTCTGTGGACACCCAAATAcTGTGGAAAACTCCGGAGTCCTGCGCGGCTCTGATCACCCAGCCGATCAGCGGGACCCCCGCCAGCATCTTGATGTTCTTGAGGGGAATGCCTTTACTGCCGCCGCGGGCCAGGATCACCGCGGCCGTGTGTCTCTCCCGCTCAGCGCCGCTCTCCGCTCGCTTCCGTTTAACGGAGTTACAGCCCCGCTCCTCCGCGCTCTGCTCGCCTCTACGTTTAGTAGCCATTCCGCTCACACGCGCTCCCGCTGCTGACACGCAGAGTCCGGGACGGGTTTTAACCCGAAAACCGCTTCAACAGCCCTAAAACCGAAACGCTGACTCCGCCCTGCGCTCTGGAATCTCCACAAGAGTACTTACTACAG
>TU83847
CATCTGTACAGAGCCTGTTTTAATGAGTGTGCATGAGTTTTTCacagttcagaaaccaataataacagaaaactgaaaaacaggAAACGTGACATTGAGAGTAATACAATCACTCTTATTAAGAtcagtttaatataaatattgacCCACATCTGGAACTTTTGGTGTTTGAGAGAGTGTTGCTAAAAAATTACATGTAACAAATAACAATGCAtagtacgtagatTTGTCcatatattcaaaataaattaacaatgtaACACTGAACTCAGGATTCAGTATCTTCAACTCAACACTGAACAGTAACAGTCAAGAGTCCTTCTTTGACCTAAAAAGTGTAGCCTATATCATAAAcataaaactgctgtttgacCTAAATCATTAGTGTTAATATAGAAGACTGATTGTGATACTTGTGAAAAGTAAACGAGTcaaaaactctgaaataaaataatttgtagGATTGATCTGTCAGCATTTGTGTAAAATCATAAacgtcattaaaaaaaatcattaatgacctattattattattacctaaAACAGAATCTCTAAACAATGTACAGAGGATTATTCAGAACCTATttgaccttaatttcttaattcctTCAATTTTAGTACCTAATACACTTTTCATTAATGTTTATAACAAAGTTAAAATTTGCATAATTGCAATAAAACGCTTCTGTAACTTTTAGTTCCATGTAAGCTTCACATTGGTGACTGTACTTCAGACCGGCACTGGGCACTCTTTTTCAGTTGCAAAATGTGCTCAATGAACTCCCGGAGCGCTCCGTGGCCTGCCCGTGACTGGCATGTGtaattagcagcatttagcaCCACCATAGGGGAGTCCATGGGCACAGCACTTATACCGGCCAGGTTCAAGCAGTCCACATCTGGCACATCA
>TU83848
CATCTGTACAGAGCCTGTTTTAATGAGTGTGCATGAGTTTTTCacagttcagaaaccaataataacagaaaactgaaaaacaggAAACGTGACATTGAGAGTAATACAATCACTCTTATTAAGAtcagtttaatataaatattgacCCACATCTGGAACTTTTGGTGTTTGAGAGAGTGTTGCTAAAAAATTACATGTAACAAATAACAATGCAtagtagatTTGTCcatatattcaaaataaattaacaatgtaACACTGAACTCAGGATTCAGTATCTTCAACTCAACACTGAACAGTAACAGTCAAGAGTCCTTCTTTGACCTAAAAAGTGTAGCCTATATCATAAAcataaaactgctgtttgacCTAAATCATTAGTGTTAATATAGAAGACTGATTGTGATACTTGTGAAAAGTAAACGAGTcaaaaactctgaaataaaataatttgtagGATTGATCTGTCAGCATTTGTGTAAAATCATAAacgtcattaaaaaaaatcattaatgacctattattattattacctaaAACAGAATCTCTAAACAATGTACAGAGGATTATTCAGAACCTATttgaccttaatttcttaattcctTCAATTTTAGTACCTAATACACTTTTCATTAATGTTTATAACAAAGTTAAAATTTGCATAATTGCAATAAAACGCTTCTGTAACTTTTAGTTCCATGTAAGCTTCACATTGGTGACTGTACTTCAGACCGGCACTGGGCACTCTTTTTCAGTTGCAAAATGTGCTCAATGAACTCCCGGAGCGCTCCGTGGCCTGCCCGTGACTGGCATGTGtaattagcagcatttagcaCCACCATAGGGGAGTCCATGGGCACAGCACTTATACCGGCCAGGTTCAAGCAGTCCACATCTGGCACATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83846 True 1590 lncRNA 0.50 8 5644843 5652784
TU83847 False 910 lncRNA 0.35 2 5642660 5645198
TU83848 False 906 lncRNA 0.35 2 5642660 5645198

Neighbor

gene id symbol gene type direction distance location
LOC107197570 LOC108442310 coding upstream 219356 5421768 ~ 5423304 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding upstream 381109 5251133 ~ 5261551 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding upstream 941225 4675359 ~ 4701435 (+)
mcm10 NA coding upstream 1543271 4083683 ~ 4099389 (+)
LOC103027723 ppara coding upstream 1568097 4048242 ~ 4074563 (+)
LOC111192904 NA coding downstream 360062 6012846 ~ 6015114 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding downstream 564027 6216811 ~ 6334340 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding downstream 757133 6409917 ~ 6426277 (+)
pus7l NA coding downstream 775222 6428006 ~ 6441574 (+)
LOC103021937 LOC108439409 coding downstream 948599 6601383 ~ 6632805 (+)
G62146 NA non-coding upstream 115595 5525778 ~ 5527065 (+)
G62103 NA non-coding upstream 188497 5447828 ~ 5454163 (+)
G62098 NA non-coding upstream 210292 5432076 ~ 5432368 (+)
G62086 NA non-coding upstream 281875 5360545 ~ 5360785 (+)
G62069 LOC103042505,LOC108425390,LOC108280006 non-coding upstream 327458 5311905 ~ 5315202 (+)
G62174 NA non-coding downstream 41613 5694397 ~ 5698893 (+)
G62224 NA non-coding downstream 126911 5779695 ~ 5780084 (+)
G62258 NA non-coding downstream 345224 5998008 ~ 5998229 (+)
G62276 NA non-coding downstream 381383 6034167 ~ 6040514 (+)
G62280 NA non-coding downstream 392390 6045174 ~ 6045425 (+)
G61575 NA other upstream 2338662 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 3707161 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 3833730 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 4161242 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 4599344 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 87771 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 129307 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 329452 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 1198446 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 2749056 8401840 ~ 8415039 (+)

Expression


Co-expression Network