G62174


Basic Information

Item Value
gene id G62174
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5694397 ~ 5698893 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83864
AGTAATAGAATTCTGCCCATAACaaattatactttaactctttcaccctctcctaTTCCCCCAATTGTGGCTCCATCATGTCTGCTACAAAAGTTGAGGTGTCAATCTTCCACTATCTCTGACCATTCATCTCTGCAGGGACCCACATCGTTTCTATGCTAATTTGAGACCCCCATTAAAGTGACCACCCTGCAGTGTTCAAAGCAGGATCCAATGTATATAATGCCCCCTCAAAATATCCCTAGTTAGATTGGTTTTGATCGACTGTGAGCTGTACCCatactctctgtgtgtgtcaatAAACTCAAGTCAACTCTGAAGCCGTCTCCTGACTCCTGAATCGGACACCTGGTTCCTGAAGGCCGAATTTCTAACAACTTGGTGCCGTGACCCGGATGGCCTACTGAAACCTACTTGATCTGTTGGAGCCAGACAGTGCTCCAGCCAATCCAGCATGGCGAGAACAATTTGTGACGTGTCGGATGCAAGCCTGAACAGTTGAAAAGACAATTGAGGTTCAAAGTGGACTTCCCAGATGGCTTTCACTGACATTGAAGCAATCGCCATggacatccacacacacacacacacacacacacacacacaaaatgtggcTGCTCACAAGCTGAAGTTGTGATGTAAGAAGAGACATCACCACATGGAAGCAAGCCTCTGGGAAAACCATGGACAACTACTGAAACTTTCTTCATTATTCTTCAGGAACATTTTAAGACCAAGTAACAGCCATAAACAGCTCCAATACTTGGTTACATCAACTTTTCTGACATTTATGGTACAATTACAGTTGTATAGTTACAGCCCTTTAATTGTTTATACATATGACAATTTATTGtacatatgtttttaatttttagtaatAATGTAGTTTTGTGATTCTCCATTTGGGAGAATCAAAGGGGGAATTAATAGAATTCTGCCCATAACaaattatactttaactctttcaccctctcctaTTCCCCCAATTGTGGCTCCATCATGTCTGCTACAAAAGTTGAGGTGTCAATCTTCCACTATCTCTGACCATTCATCTCTGCAGGGACCCACATCGTTTCTATGCTAATTTGAGACCCCCATTAAAGTGACCACCCTGCAGTGTTCAAAGCAGGATCCAATGTATATAATGCCCCCTCAAAATATCCCTAGTTAGATTGGTTTTGATCGACTGTGAGCTGTACCCatactctctgtgtgtgtcaatAAACTCAAGTCAACTCTGAAGCCGTCTCCTGACTCCTGAATCGGACACCTGGTTCCTGAAGGCCGAATTTCTAACATTAGAATAAGAATTCCATAAGCTTTTTCCAGTTATCAAACAGCAC
>TU83866
AGTAATAGAATTCTGCCCATAACaaattatactttaactctttcaccctctcctaTTCCCCCAATTGTGGCTCCATCATGTCTGCTACAAAAGTTGAGGTGTCAATCTTCCACTATCTCTGACCATTCATCTCTGCAGGGACCCACATCGTTTCTATGCTAATTTGAGACCCCCATTAAAGTGACCACCCTGCAGTGTTCAAAGCAGGATCCAATGTATATAATGCCCCCTCAAAATATCCCTAGTTAGATTGGTTTTGATCGACTGTGAGCTGTACCCatactctctgtgtgtgtcaatAAACTCAAGTCAACTCTGAAGCCGTCTCCTGACTCCTGAATCGGACACCTGGTTCCTGAAGGCCGAATTTCTAACATTAGAATAAGAATTCCATAAGCTTTTTCCAGTTATCAAACAGCAC

Function

GO:

id name namespace
GO:0032501 multicellular organismal process biological_process

KEGG:

id description
ko04330 Notch signaling pathway
ko05200 Pathways in cancer
ko05224 Breast cancer
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU83864 True 1343 lncRNA 0.42 2 5694397 5698893
TU83866 False 421 lncRNA 0.42 2 5694397 5698893

Neighbor

gene id symbol gene type direction distance location
LOC107197570 LOC108442310 coding upstream 271093 5421768 ~ 5423304 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding upstream 432846 5251133 ~ 5261551 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding upstream 992962 4675359 ~ 4701435 (+)
mcm10 NA coding upstream 1595008 4083683 ~ 4099389 (+)
LOC103027723 ppara coding upstream 1619834 4048242 ~ 4074563 (+)
LOC111192904 NA coding downstream 313953 6012846 ~ 6015114 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding downstream 517918 6216811 ~ 6334340 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding downstream 711024 6409917 ~ 6426277 (+)
pus7l NA coding downstream 729113 6428006 ~ 6441574 (+)
LOC103021937 LOC108439409 coding downstream 902490 6601383 ~ 6632805 (+)
G62162 NA non-coding upstream 41613 5642660 ~ 5652784 (+)
G62146 NA non-coding upstream 167332 5525778 ~ 5527065 (+)
G62103 NA non-coding upstream 240234 5447828 ~ 5454163 (+)
G62098 NA non-coding upstream 262029 5432076 ~ 5432368 (+)
G62086 NA non-coding upstream 333612 5360545 ~ 5360785 (+)
G62224 NA non-coding downstream 80802 5779695 ~ 5780084 (+)
G62258 NA non-coding downstream 299115 5998008 ~ 5998229 (+)
G62276 NA non-coding downstream 335274 6034167 ~ 6040514 (+)
G62280 NA non-coding downstream 346281 6045174 ~ 6045425 (+)
G62284 NA non-coding downstream 375396 6074289 ~ 6074626 (+)
G61575 NA other upstream 2390399 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 3758898 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 3885467 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 4212979 1445635 ~ 1481418 (+)
G61013 LOC108444125,LOC108444119,LOC108412201,LOC108262118 other upstream 4651081 853526 ~ 1043316 (+)
LOC111192936 NA other downstream 41662 5740555 ~ 5765785 (+)
plxnb2 NA other downstream 83198 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 283343 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 1152337 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 2702947 8401840 ~ 8415039 (+)

Expression


Co-expression Network