G62217


Basic Information

Item Value
gene id G62217
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5759463 ~ 5761833 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83922
TGATGAGCACACACAAACCTAAAGTACCAGAAAAATAATCTTAGAAAATAGTActacataaattaaaataagatcTAGATTACAAACCTTTGCTTCTAAAGTGAGGGCCTAATGTACCCCTAGAAAGTTGTGTAGCCCGACATAAAAGGCTGGGTGGGTCTGTTTGGGTACTGGTATGAATGATGGGTGTCACCAATGTCTGTGATGTGCTCTGGAAGACACACAAAACACTAAGTAAACAGCAAGTAATCAAGCGAAAcattaatgtaaacaaaaaacaatcataataaaataagaCAGGCTAAATTACGCTATTATAAATACTCTATCTGCAAATGTTCTACTGATACGGGAAAATTTCCAAGGGAAAATTTCCCTTTGTTGCATAGCTTGGTGATGTTGATAgctagttacttacacaagatagctagcaTAACaagtgtaaaacataaataatttttacatttttttaatattatacgtatattatacatatttcatatttttttgtgaaatgggAAGCTACATATACTCATTAATTAGCTAATTTATCCACTGTTTACTTTCACTTGATTCTGTTCTTACACAGTCCCTAGTGATATCAAGTTAGCCATTTTAGCCAGGCTAAGATGATTTTGTTGTTAATATTATAAATCGTGGGGTAACGCTTAGTTTAGGACGGAGAATATGGGTTTAACACGCTAACATTAAGTCTCTGGATAGCAGCTAGCAGGCGAGTGTGGTCATAGATCTGAGTGCTAGCCTGCCTCATGGGTGCTCATTCCTGGTCTTGGGAGATTTCAGATGTAAAACAAGTCAATAATGGTAGCTAACCTGTCCTGGAGGGCCTTGATTACCCGGAGCAGGTGTGTGAGGTTAGAGCAGataaaccaTACAGGGTGGTAGATCTCCAGGAACAGAAATAAGCACCCCTGGCTTAGCTTGTGCCTACTTCATGTGTGCTAACGCTAACATGCGAACGtgaagaacataaacaaactatttagaaacaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83922 True 1015 lncRNA 0.37 2 5759463 5761833

Neighbor

gene id symbol gene type direction distance location
abcc9 abcc9,LOC108439416 coding downstream 33180 5664901 ~ 5726283 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 coding downstream 96182 5658448 ~ 5663281 (-)
cmas NA coding downstream 106440 5644509 ~ 5653023 (-)
LOC103037729 LOC108442307,LOC107676911,LOC107583751 coding downstream 264812 5456709 ~ 5494651 (-)
LOC103042505 LOC103042505,LOC108425390,LOC108280006 coding downstream 423064 5314557 ~ 5336399 (-)
nuak1 nuak1,nuak1a,LOC108439414,LOC107587153,LOC107729860,LOC107690659,LOC107582835 coding upstream 334507 6096340 ~ 6119766 (-)
LOC103029290 prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933 coding upstream 378129 6139962 ~ 6144208 (-)
LOC111192868 NA coding upstream 960269 6722102 ~ 6723530 (-)
LOC111192905 NA coding upstream 973324 6735157 ~ 6736574 (-)
gpr85 gpr85,LOC106576049,LOC107580073 coding upstream 1089335 6851168 ~ 6855742 (-)
G62210 NA non-coding downstream 27276 5731028 ~ 5732187 (-)
G62150 NA non-coding downstream 229267 5528696 ~ 5530196 (-)
G62147 NA non-coding downstream 232603 5525793 ~ 5526860 (-)
G62127 NA non-coding downstream 307206 5445563 ~ 5452257 (-)
G62125 NA non-coding downstream 309186 5443582 ~ 5450277 (-)
G62237 NA non-coding upstream 166659 5928492 ~ 5967717 (-)
G62244 plxnb2a,LOC108439415,LOC108279839,LOC107587155,LOC107725571 non-coding upstream 186365 5948198 ~ 5950005 (-)
G62272 NA non-coding upstream 252171 6014004 ~ 6015703 (-)
G62307 NA non-coding upstream 396424 6158257 ~ 6159938 (-)
G62354 NA non-coding upstream 573690 6335523 ~ 6335771 (-)
G61942 NA other downstream 1136886 4622213 ~ 4622577 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other downstream 1333307 4335118 ~ 4426156 (-)
cdpf1 cdpf1,LOC107695897 other downstream 1912994 3840601 ~ 3846469 (-)
G61676 NA other downstream 2101195 3650845 ~ 3658268 (-)
mdm1 NA other downstream 2210761 3529520 ~ 3548702 (-)
G62377 NA other upstream 612636 6374469 ~ 6374980 (-)
pphln1 pphln1,LOC108279830 other upstream 871177 6633010 ~ 6695389 (-)
G62484 NA other upstream 909777 6671610 ~ 6737948 (-)
LOC111192938 NA other upstream 966041 6727874 ~ 6733125 (-)
LOC111192940 NA other upstream 1025509 6787342 ~ 6859670 (-)

Expression


Co-expression Network