G62224


Basic Information

Item Value
gene id G62224
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5779695 ~ 5780084 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83931
actagtggttggatgaggaactgctaaatctgaggaactgctaaatctatcacatgttcttaacagctcacaatttttgattttatatttattaagccttatttcagtatcaaacgttttgatcaaagttaatataacttgtattttatgtcatttctattcacttgaatagtttggttcttgattgatggagtttttggatttcataacatgacaaattaaaaggatttatgttaatagagcaacaagcaaacattttttccatttagagttatttaacattaaagagtaattacattcattttatattacatttggttacattttattacatttataagttacatctggccctcagaggacagccaatatgccaatgtggccctcggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83931 True 390 lncRNA 0.30 1 5779695 5780084

Neighbor

gene id symbol gene type direction distance location
LOC107197570 LOC108442310 coding upstream 356391 5421768 ~ 5423304 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding upstream 518144 5251133 ~ 5261551 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding upstream 1078260 4675359 ~ 4701435 (+)
mcm10 NA coding upstream 1680306 4083683 ~ 4099389 (+)
LOC103027723 ppara coding upstream 1705132 4048242 ~ 4074563 (+)
LOC111192904 NA coding downstream 232762 6012846 ~ 6015114 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding downstream 436727 6216811 ~ 6334340 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding downstream 629833 6409917 ~ 6426277 (+)
pus7l NA coding downstream 647922 6428006 ~ 6441574 (+)
LOC103021937 LOC108439409 coding downstream 821299 6601383 ~ 6632805 (+)
G62174 NA non-coding upstream 80802 5694397 ~ 5698893 (+)
G62162 NA non-coding upstream 126911 5642660 ~ 5652784 (+)
G62146 NA non-coding upstream 252630 5525778 ~ 5527065 (+)
G62103 NA non-coding upstream 325532 5447828 ~ 5454163 (+)
G62098 NA non-coding upstream 347327 5432076 ~ 5432368 (+)
G62258 NA non-coding downstream 217924 5998008 ~ 5998229 (+)
G62276 NA non-coding downstream 254083 6034167 ~ 6040514 (+)
G62280 NA non-coding downstream 265090 6045174 ~ 6045425 (+)
G62284 NA non-coding downstream 294205 6074289 ~ 6074626 (+)
G62287 NA non-coding downstream 391129 6171213 ~ 6172168 (+)
LOC111192936 NA other upstream 13910 5740555 ~ 5765785 (+)
G61575 NA other upstream 2475697 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 3844196 1921395 ~ 1935499 (+)
LOC103031096 pclo,pcloa,LOC107655554,LOC107577557 other upstream 3970765 1714817 ~ 1808930 (+)
LOC103024246 tspan11,LOC108279944,LOC107593980,LOC106576552,LOC107720401,LOC107560736,LOC107694254 other upstream 4298277 1445635 ~ 1481418 (+)
plxnb2 NA other downstream 2007 5782091 ~ 5967735 (+)
c7h12orf75 NA other downstream 202152 5982236 ~ 5993994 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 1071146 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 2621756 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 2746134 8526218 ~ 8540123 (+)

Expression


Co-expression Network