G62237


Basic Information

Item Value
gene id G62237
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5928492 ~ 5967717 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU83948
ttttaatacattttttcttcACTGCCTTTTAAAACATTGACCAGCTTTAAGCAAACCATAGTGGCACTTCTCACATACAGGCACATACGCAAAATGGCATATTGTACAAAAAACCTAGTCACTATTGCAGTCTCGAATACAGCCACAATCACCACAGCTCTGATTATTATTACTCATGTTTCATTAAGGCACTTCCTGATAGATAAATGGCAAAACCGAAGAATTCACAATATGCCGATGCGTTCTcgtaaaacagaaaagaaaatcatgaacaggaaggatggagagatttaAAGTCTGGAttcattaaaaaagaataataataataaaaatacacagcaTAGACATCTATTGATATGTGTAGTGCATGGAGCATCTGAGTCAGACCGTTGAATCATAAGTACCATCAATTAGCAAGATAAAACGCACTTAGTCGATAACAAGTCCTGTACTCGTCCTTTAGGACctaaaacatgataaacaattctttttttctcaaaaaaaagtttaaagggaaaataatgattaaacaCAGACAGTTCAGAACAGTACTAAACTTTGGTAAGCTCTAAAAtcaacataaaactccacagtGACAGTTCTAAGAattgcacagttttttttttttaacaagtgaAAGATTAGAAGGCCTTGTTCAGCTGAATTAAGtccttttatgtatttaatcaCTGACTTATTCTTTGTCCTTCCAAATTACAGCCAGTCATGCCTTGCAATCAGAGCTATTTGTAATCAACCGCTTTTCAAGAGGCTAGAAGAGCAGATGGTGAGAGAAATAGCAACATTCGAGCTTCGACACAATCAAAaggtcaaaatgtgtaaaatctcTTTGTCGATGTTTAGGATGACAAGGCGCTCCTCCTAGTTGAGCAGATCTTACGGCGGTTGTaacaaagaattaaaaaagttaaatgttccaaaaaaataaaacaaatgtacgCAAAGTCCTGTGTGCTGCAGTTCATGATTACAAAAAAGTAAAGGcgttaaaaacagctaaaacaaaaaaatgcttgCTAAAAATCGACACATCAGACTTTTAAATGGTGGACAAATGGACCTGGACTAATAACCtgtgatgatggatggatgtggAATGCAAAGAATATTCTTAAATAACGCAATATTGTGGCAGGTATGGAATGTTCTGGGAGTTTACTTTGGGTGACATGAACAGTATGAGACTTGTGGTACCTTTAACCAAAGCAGTGGAGAGATTCCTACCCTCTCCTGGCCAACAACTTTCCTCATATACATCTTCTCTTAACATAAACTAGCAGCGGCAAAAAGGATTGGACAAAGCATCTGGTCATGCGAAAATCACCAACACAGAACAGAAGGAAAATAAAAGCAACATCTTCTTTAAAGGCATGATTATGCATACAGTCGTACTGCATTTACACCCATAAGACACCCAAGGCAACATAAATTCCACATGAAGTGACCTCAAGAAGGAATGTGACCGACGTTGCTCCACAGTTATTTGCTGTAAAAAGATGCAGTGGTCGTCAACTAAACaataaaatttatatatatattttttttt
>TU83949
ttttaatacattttttcttcACTGCCTTTTAAAACATTGACCAGCTTTAAGCAAACCATAGTGGCACTTCTCACATACAGGCACATACGCAAAATGGCATATTGTACAAAAAACCTAGTCACTATTGCAGTCTCGAATACAGCCACAATCACCACAGCTCTGATTATTATTACTCATGTTTCATTAAGGCACTTCCTGATAGATAAATGGCAAAACCGAAGAATTCACAATATGCCGATGCGTTCTcgtaaaacagaaaagaaaatcatgaacaggaaggatggagagatttaAAGTCTGGAttcattaaaaaagaataataataataaaaatacacagcaTAGACATCTATTGATATGTGTAGTGCATGGAGCATCTGAGTCAGACCGTTGAATCATAAGTACCATCAATTAGCAAGATAAAACGCACTTAGTCGATAACAAGTCCTGTACTCGTCCTTTAGGACctaaaacatgataaacaattctttttttctcaaaaaaaagtttaaagggaaaataatgattaaacaCAGACAGTTCAGAACAGTACTAAACTTTGGTAAGCTCTAAAAtcaacataaaactccacagtGACAGTTCTAAGAattgcacagttttttttttttaacaagtgaAAGATTAGAAGGCCTTGTTCAGCTGAATTAAGtccttttatgtatttaatcaCTGACTTATTCTTTGTCCTTCCAAATTACAGCCAGTCATGCCTTGCAATCAGAGCTATTTGTAATCAACCGCTTTTCAAGAGGCTAGAAGAGCAGATGGTGAGAGAAATAGCAACATTCGAGCTTCGACACAATCAAAaggtcaaaatgtgtaaaatctcTTTGTCGATGTTTAGGATGACAAGGCGCTCCTCCTAGTTGAGCAGATCTTACGGCGGTTGTaacaaagaattaaaaaagttaaatgttccaaaaaaataaaacaaatgtacgCAAAGTCCTGTGTGCTGCAGTTCATGATTACAAAAAAGTAAAGGcgttaaaaacagctaaaacaaaaaaatgcttgCTAAAAATCGACACATCAGACTTTTAAATGGTGGACAAATGGACCTGGACTAATAACCtgtgatgatggatggatgtggAATGCAAAGAATATTCTTAAATAACGCAATATTGTGGCAGGTATGGAATGTTCTGGGAGTTTACTTTGGGTGACATGAACAGTATGAGACTTGTGGTACCTTTAACCAAAGCAGTGGAGAGATTCCTACCCTCTCCTGGCCAACAACTTTCCTCATATACATCTTCTCTTAACATAAACTAGCAGCGGCAAAAAGGATTGGACAAAGCATCTGGTCATGCGAAAATCACCAACACAGAACAGAAGGAAAATAAAAGCAACATCTTCTTTAAAGGCATGATTATGCATACAGTCGTACTGCATTTACACCCATAAGACACCCAAGGCAACATAAATTCCACATGAAGTGACCTCAAGAAGGAATGTGACCGACGTTGCTCCACAGTTATTTGCTGTAAAAAGATGCAGTGGTCGTCAACTAAACaataaaatttatatatatatttttt
>TU83950
ttttaatacattttttcttcACTGCCTTTTAAAACATTGACCAGCTTTAAGCAAACCATAGTGGCACTTCTCACATACAGGCACATACGCAAAATGGCATATTGTACAAAAAACCTAGTCACTATTGCAGTCTCGAATACAGCCACAATCACCACAGCTCTGATTATTATTACTCATGTTTCATTAAGGCACTTCCTGATAGATAAATGGCAAAACCGAAGAATTCACAATATGCCGATGCGTTCTcgtaaaacagaaaagaaaatcatgaacaggaaggatggagagatttaAAGTCTGGAttcattaaaaaagaataataataataaaaatacacagcaTAGACATCTATTGATATGTGTAGTGCATGGAGCATCTGAGTCAGACCGTTGAATCATAAGTACCATCAATTAGCAAGATAAAACGCACTTAGTCGATAACAAGTCCTGTACTCGTCCTTTAGGACctaaaacatgataaacaattctttttttctcaaaaaaaagtttaaagggaaaataatgattaaacaCAGACAGTTCAGAACAGTACTAAACTTTGGTAAGCTCTAAAAtcaacataaaactccacagtGACAGTTCTAAGAattgcacagttttttttttttaacaagtgaAAGATTAGAAGGCCTTGTTCAGCTGAATTAAGtccttttatgtatttaatcaCTGACTTATTCTTTGTCCTTCCAAATTACAGCCAGTCATGCCTTGCAATCAGAGCTATTTGTAATCAACCGCTTTTCAAGAGGCTAGAAGAGCAGATGGTGAGAGAAATAGCAACATTCGAGCTTCGACACAATCAAAaggtcaaaatgtgtaaaatctcTTTGTCGATGTTTAGGATGACAAGGCGCTCCTCCTAGTTGAGCAGATCTTACGGCGGTTGTaacaaagaattaaaaaatgtttaatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83948 True 1567 lncRNA 0.36 2 5928492 5967717
TU83949 False 1564 lncRNA 0.36 2 5946934 5967717
TU83950 False 937 lncRNA 0.35 2 5936670 5967717

Neighbor

gene id symbol gene type direction distance location
abcc9 abcc9,LOC108439416 coding downstream 202209 5664901 ~ 5726283 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 coding downstream 265211 5658448 ~ 5663281 (-)
cmas NA coding downstream 275469 5644509 ~ 5653023 (-)
LOC103037729 LOC108442307,LOC107676911,LOC107583751 coding downstream 433841 5456709 ~ 5494651 (-)
LOC103042505 LOC103042505,LOC108425390,LOC108280006 coding downstream 592093 5314557 ~ 5336399 (-)
nuak1 nuak1,nuak1a,LOC108439414,LOC107587153,LOC107729860,LOC107690659,LOC107582835 coding upstream 128623 6096340 ~ 6119766 (-)
LOC103029290 prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933 coding upstream 172245 6139962 ~ 6144208 (-)
LOC111192868 NA coding upstream 754385 6722102 ~ 6723530 (-)
LOC111192905 NA coding upstream 767440 6735157 ~ 6736574 (-)
gpr85 gpr85,LOC106576049,LOC107580073 coding upstream 883451 6851168 ~ 6855742 (-)
G62217 NA non-coding downstream 166659 5759463 ~ 5761833 (-)
G62210 NA non-coding downstream 196305 5731028 ~ 5732187 (-)
G62150 NA non-coding downstream 398296 5528696 ~ 5530196 (-)
G62147 NA non-coding downstream 401632 5525793 ~ 5526860 (-)
G62127 NA non-coding downstream 476235 5445563 ~ 5452257 (-)
G62272 NA non-coding upstream 46287 6014004 ~ 6015703 (-)
G62307 NA non-coding upstream 190540 6158257 ~ 6159938 (-)
G62354 NA non-coding upstream 367806 6335523 ~ 6335771 (-)
G62361 NA non-coding upstream 387086 6354803 ~ 6355105 (-)
G62363 NA non-coding upstream 390944 6358661 ~ 6363880 (-)
G61942 NA other downstream 1305915 4622213 ~ 4622577 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other downstream 1502336 4335118 ~ 4426156 (-)
cdpf1 cdpf1,LOC107695897 other downstream 2082023 3840601 ~ 3846469 (-)
G61676 NA other downstream 2270224 3650845 ~ 3658268 (-)
mdm1 NA other downstream 2379790 3529520 ~ 3548702 (-)
G62377 NA other upstream 406752 6374469 ~ 6374980 (-)
pphln1 pphln1,LOC108279830 other upstream 665293 6633010 ~ 6695389 (-)
G62484 NA other upstream 703893 6671610 ~ 6737948 (-)
LOC111192938 NA other upstream 760157 6727874 ~ 6733125 (-)
LOC111192940 NA other upstream 819625 6787342 ~ 6859670 (-)

Expression


Co-expression Network