Gene
RNA
| Item | Value |
|---|---|
| gene id | G62272 |
| gene name | NA |
| gene type | non-coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035903.1 |
| NCBI id | CM008306.1 |
| chromosome length | 40813162 |
| location | 6014004 ~ 6015703 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| id | name | namespace |
|---|---|---|
| GO:0009259 | ribonucleotide metabolic process | biological_process |
| GO:0009260 | ribonucleotide biosynthetic process | biological_process |
| GO:0006091 | generation of precursor metabolites and energy | biological_process |
| GO:1901293 | nucleoside phosphate biosynthetic process | biological_process |
| GO:1901576 | organic substance biosynthetic process | biological_process |
| GO:0009117 | nucleotide metabolic process | biological_process |
| GO:0044249 | cellular biosynthetic process | biological_process |
| GO:0046390 | ribose phosphate biosynthetic process | biological_process |
| GO:0055086 | nucleobase-containing small molecule metabolic process | biological_process |
| GO:0019637 | organophosphate metabolic process | biological_process |
| GO:0006753 | nucleoside phosphate metabolic process | biological_process |
| GO:0009141 | nucleoside triphosphate metabolic process | biological_process |
| GO:0009142 | nucleoside triphosphate biosynthetic process | biological_process |
| GO:0044283 | small molecule biosynthetic process | biological_process |
| GO:0090407 | organophosphate biosynthetic process | biological_process |
| GO:1901135 | carbohydrate derivative metabolic process | biological_process |
| GO:1901137 | carbohydrate derivative biosynthetic process | biological_process |
| GO:0009165 | nucleotide biosynthetic process | biological_process |
| GO:0019693 | ribose phosphate metabolic process | biological_process |
| GO:0005975 | carbohydrate metabolic process | biological_process |
| GO:0009199 | ribonucleoside triphosphate metabolic process | biological_process |
| GO:0009201 | ribonucleoside triphosphate biosynthetic process | biological_process |
| GO:0034404 | nucleobase-containing small molecule biosynthetic process | biological_process |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU83988 | True | 1415 | lncRNA | 0.48 | 2 | 6014004 | 6015703 |
| TU83989 | False | 1415 | lncRNA | 0.48 | 2 | 6014004 | 6015703 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| abcc9 | abcc9,LOC108439416 | coding | downstream | 287721 | 5664901 ~ 5726283 (-) |
| kcnj8 | kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 | coding | downstream | 350723 | 5658448 ~ 5663281 (-) |
| cmas | NA | coding | downstream | 360981 | 5644509 ~ 5653023 (-) |
| LOC103037729 | LOC108442307,LOC107676911,LOC107583751 | coding | downstream | 519353 | 5456709 ~ 5494651 (-) |
| LOC103042505 | LOC103042505,LOC108425390,LOC108280006 | coding | downstream | 677605 | 5314557 ~ 5336399 (-) |
| nuak1 | nuak1,nuak1a,LOC108439414,LOC107587153,LOC107729860,LOC107690659,LOC107582835 | coding | upstream | 80637 | 6096340 ~ 6119766 (-) |
| LOC103029290 | prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933 | coding | upstream | 124259 | 6139962 ~ 6144208 (-) |
| LOC111192868 | NA | coding | upstream | 706399 | 6722102 ~ 6723530 (-) |
| LOC111192905 | NA | coding | upstream | 719454 | 6735157 ~ 6736574 (-) |
| gpr85 | gpr85,LOC106576049,LOC107580073 | coding | upstream | 835465 | 6851168 ~ 6855742 (-) |
| G62237 | NA | non-coding | downstream | 46287 | 5928492 ~ 5967717 (-) |
| G62244 | plxnb2a,LOC108439415,LOC108279839,LOC107587155,LOC107725571 | non-coding | downstream | 63999 | 5948198 ~ 5950005 (-) |
| G62217 | NA | non-coding | downstream | 252171 | 5759463 ~ 5761833 (-) |
| G62210 | NA | non-coding | downstream | 281817 | 5731028 ~ 5732187 (-) |
| G62150 | NA | non-coding | downstream | 483808 | 5528696 ~ 5530196 (-) |
| G62307 | NA | non-coding | upstream | 142554 | 6158257 ~ 6159938 (-) |
| G62354 | NA | non-coding | upstream | 319820 | 6335523 ~ 6335771 (-) |
| G62361 | NA | non-coding | upstream | 339100 | 6354803 ~ 6355105 (-) |
| G62363 | NA | non-coding | upstream | 342958 | 6358661 ~ 6363880 (-) |
| G62375 | NA | non-coding | upstream | 357992 | 6373695 ~ 6374194 (-) |
| G61942 | NA | other | downstream | 1391427 | 4622213 ~ 4622577 (-) |
| LOC103039416 | cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 | other | downstream | 1587848 | 4335118 ~ 4426156 (-) |
| cdpf1 | cdpf1,LOC107695897 | other | downstream | 2167535 | 3840601 ~ 3846469 (-) |
| G61676 | NA | other | downstream | 2355736 | 3650845 ~ 3658268 (-) |
| mdm1 | NA | other | downstream | 2465302 | 3529520 ~ 3548702 (-) |
| G62377 | NA | other | upstream | 358766 | 6374469 ~ 6374980 (-) |
| pphln1 | pphln1,LOC108279830 | other | upstream | 617307 | 6633010 ~ 6695389 (-) |
| G62484 | NA | other | upstream | 655907 | 6671610 ~ 6737948 (-) |
| LOC111192938 | NA | other | upstream | 712171 | 6727874 ~ 6733125 (-) |
| LOC111192940 | NA | other | upstream | 771639 | 6787342 ~ 6859670 (-) |
