G62280


Basic Information

Item Value
gene id G62280
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6045174 ~ 6045425 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU84002
TACAAATCAAGCCCTGAATATATTTCTGGCTTCAACATGAATATCAACATGCCCAATTAATTTTACTGCCCCCCCAAGCAAATCAGTCCAGAACCGGGGCTGTATGTGGTCATCCTCATGTTATCTatcattgatttgggctagagcggctagtttatctggtgaccagtcggctaaagatgcttagtagtttggtgctgtatgagacattttactgcacaacaaaatggtttcacgttgggcttagagggc

Function

GO: NA

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU84002 True 252 lncRNA 0.43 1 6045174 6045425

Neighbor

gene id symbol gene type direction distance location
LOC111192904 NA coding upstream 30060 6012846 ~ 6015114 (+)
LOC107197570 LOC108442310 coding upstream 621870 5421768 ~ 5423304 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding upstream 783623 5251133 ~ 5261551 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding upstream 1343739 4675359 ~ 4701435 (+)
mcm10 NA coding upstream 1945785 4083683 ~ 4099389 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding downstream 171386 6216811 ~ 6334340 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding downstream 364492 6409917 ~ 6426277 (+)
pus7l NA coding downstream 382581 6428006 ~ 6441574 (+)
LOC103021937 LOC108439409 coding downstream 555958 6601383 ~ 6632805 (+)
zcrb1 zcrb1 coding downstream 650165 6695590 ~ 6703894 (+)
G62276 NA non-coding upstream 4660 6034167 ~ 6040514 (+)
G62258 NA non-coding upstream 46945 5998008 ~ 5998229 (+)
G62224 NA non-coding upstream 265090 5779695 ~ 5780084 (+)
G62174 NA non-coding upstream 346281 5694397 ~ 5698893 (+)
G62162 NA non-coding upstream 392390 5642660 ~ 5652784 (+)
G62284 NA non-coding downstream 28864 6074289 ~ 6074626 (+)
G62287 NA non-coding downstream 125788 6171213 ~ 6172168 (+)
G62309 NA non-coding downstream 131799 6177224 ~ 6177505 (+)
G62311 NA non-coding downstream 137426 6182851 ~ 6186130 (+)
G62367 NA non-coding downstream 318912 6364337 ~ 6364626 (+)
c7h12orf75 NA other upstream 51180 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 77439 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 279389 5740555 ~ 5765785 (+)
G61575 NA other upstream 2741176 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 4109675 1921395 ~ 1935499 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 805805 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 2356415 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 2480793 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 3386074 9431499 ~ 9440564 (+)
G63051 NA other downstream 3601154 9646579 ~ 9650087 (+)

Expression


Co-expression Network