G62287


Basic Information

Item Value
gene id G62287
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6171213 ~ 6172168 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU84011
AGGGTTATTTCCCCATCCCTCTGTGCTCTCTGCAGGTCAGGAGTGGACGGATAGCGTAATTACGTTGTGGGGGAGATCATGGGGTGGAGCAAGTCTCTAGTGCCCTCATCCATCACTCCCCCGGAGGTCCTGCTTTTAAAATGTTGAGCTGTTTGGAGCAGCAagctgtgaatgtgtgtgtgtgtgtgtgtgtcctgtggaATGCCAATGAGGCTTGTGTGTTAGCGCTGCAAGATCATCAGCAGGTAACAGATGTGAGCTTAATGCCATCTGACAGCGTTGGAAGCTGACAGTCAGCGACGCATCGGATCTGCTATAGATTTAGCTTTGAGGCTCCATCAGTCAAGCtgtttatatagtatatatggaTTTCTACATTAATGACTTCTGCTATGCACGTCATAAAAGATGTCAGAATATTCATCATTCATACGTGTACAATCTTCTCTGAGACTCTGTACTAACTGCTATACACTTCTGTACACTGATATGACGAATACCATGTCCCATGATGTAACCAAAGAATTctccactgacctgtgggatatgtgtgggTTCTCCTGCAATGAATCTGTATGTGATTACCTGCACAACCTTGGAAAATAAATCTCCATACATCTGTTCTCCGCTATCAAACGCCGCTCTCAAGTCACAACATATACtcgtgtgggtgttcccaagccgtCCCTTGAAGTAAGACGTCATGATCAACTTAAGGTGGAGTGAAAAAGTATGTACCCCCTAcggatttcttttgtttttgctttttttgtcatactgatatttttcagatgatcaaacaaactttaatatcagacaaagataaagtaaataaaaaagtaaataaagtaggtaaaaaattatttattacatgaaattatgattttaaaaaagtttttttttttacttactttatttacttttaaaggaattaaaccattaaaccaatCTAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84011 True 956 lncRNA 0.40 1 6171213 6172168

Neighbor

gene id symbol gene type direction distance location
LOC111192904 NA coding upstream 156099 6012846 ~ 6015114 (+)
LOC107197570 LOC108442310 coding upstream 747909 5421768 ~ 5423304 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding upstream 909662 5251133 ~ 5261551 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding upstream 1469778 4675359 ~ 4701435 (+)
mcm10 NA coding upstream 2071824 4083683 ~ 4099389 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding downstream 44643 6216811 ~ 6334340 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding downstream 237749 6409917 ~ 6426277 (+)
pus7l NA coding downstream 255838 6428006 ~ 6441574 (+)
LOC103021937 LOC108439409 coding downstream 429215 6601383 ~ 6632805 (+)
zcrb1 zcrb1 coding downstream 523422 6695590 ~ 6703894 (+)
G62284 NA non-coding upstream 96587 6074289 ~ 6074626 (+)
G62280 NA non-coding upstream 125788 6045174 ~ 6045425 (+)
G62276 NA non-coding upstream 130699 6034167 ~ 6040514 (+)
G62258 NA non-coding upstream 172984 5998008 ~ 5998229 (+)
G62224 NA non-coding upstream 391129 5779695 ~ 5780084 (+)
G62309 NA non-coding downstream 5056 6177224 ~ 6177505 (+)
G62311 NA non-coding downstream 10683 6182851 ~ 6186130 (+)
G62367 NA non-coding downstream 192169 6364337 ~ 6364626 (+)
G62386 NA non-coding downstream 224118 6396286 ~ 6396553 (+)
G62400 NA non-coding downstream 258423 6430591 ~ 6531823 (+)
c7h12orf75 NA other upstream 177219 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 203478 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 405428 5740555 ~ 5765785 (+)
G61575 NA other upstream 2867215 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 4235714 1921395 ~ 1935499 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 679062 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 2229672 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 2354050 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 3259331 9431499 ~ 9440564 (+)
G63051 NA other downstream 3474411 9646579 ~ 9650087 (+)

Expression


Co-expression Network