G62311


Basic Information

Item Value
gene id G62311
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6182851 ~ 6186130 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU84038
GGGCGTCTCGAGccctcactctgtgtgtgtgatcgCGCGCGCAGCAGCAGGTATggtgctccagctcctcctccgcTCCGCCGCGGATCCCCGCTCTGTCTGCTGAGTCTCTGTTCATCACTGTCCGCGCTCCTCTCCCCGCTCCGCGTCTCTCCGTGCGGACTGTAAAGTTTCAGCTGCTGTTTGGTCATGCGCAGTCGGGCGCTCCTTGGGACTGAGCAGTGATGCGGACTCTCTCGCGGGGACGCGCAGATGGACCTGCCGCTTCCTTCAGCATGAGACTATTCCAACTTTCAGCGCTGATCTCAGTCAGCCTGCTCTCCTCCGTTTCAGGTTTCagtttaaacctgttttttaggGATTGAATCTGTTTTtaggattgttgttttttctttttagtttccAGTTTTGGGTTTAAACCTTTTTAGGGGTTGagtctgctttttattttaagg
>TU84039
GGGCGTCTCGAGccctcactctgtgtgtgtgatcgCGCGCGCAGCAGCAGGTATggtgctccagctcctcctccgcTCCGCCGCGGATCCCCGCTCTGTCTGCTGAGTCTCTGTTCATCACTGTCCGCGCTCCTCTCCCCGCTCCGCGTCTCTCCGTGCGGACTGTAAAGTTTCAGCTGCTGTTTGGTCATGCGCAGTCGGGCGCTCCTTGGGACTGAGCAGTGATGCGGACTCTCTCGCGGGGACGCGCAGATGGACCTGCCGCTTCCTTCAGCATGAGACTATTCCAACTTTCAGCGCTGATCTCAGTCAGCCTGCTCTCCTCCGtttcaGGTTT

Function

GO:

id name namespace
GO:0051962 positive regulation of nervous system development biological_process
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05030 Cocaine addiction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU84038 True 455 lncRNA 0.54 2 6182851 6184508
TU84039 False 337 lncRNA 0.62 2 6182851 6186130

Neighbor

gene id symbol gene type direction distance location
LOC111192904 NA coding upstream 167737 6012846 ~ 6015114 (+)
LOC107197570 LOC108442310 coding upstream 759547 5421768 ~ 5423304 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding upstream 921300 5251133 ~ 5261551 (+)
LOC103041372 LOC103041372,LOC108425387,LOC107710120,LOC107580024,LOC100535105,LOC107658877,LOC108279439,LOC107656361,LOC107726057 coding upstream 1481416 4675359 ~ 4701435 (+)
mcm10 NA coding upstream 2083462 4083683 ~ 4099389 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding downstream 30681 6216811 ~ 6334340 (+)
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding downstream 223787 6409917 ~ 6426277 (+)
pus7l NA coding downstream 241876 6428006 ~ 6441574 (+)
LOC103021937 LOC108439409 coding downstream 415253 6601383 ~ 6632805 (+)
zcrb1 zcrb1 coding downstream 509460 6695590 ~ 6703894 (+)
G62309 NA non-coding upstream 5346 6177224 ~ 6177505 (+)
G62287 NA non-coding upstream 10683 6171213 ~ 6172168 (+)
G62284 NA non-coding upstream 108225 6074289 ~ 6074626 (+)
G62280 NA non-coding upstream 137426 6045174 ~ 6045425 (+)
G62276 NA non-coding upstream 142337 6034167 ~ 6040514 (+)
G62367 NA non-coding downstream 178207 6364337 ~ 6364626 (+)
G62386 NA non-coding downstream 210156 6396286 ~ 6396553 (+)
G62400 NA non-coding downstream 244461 6430591 ~ 6531823 (+)
G62420 NA non-coding downstream 479265 6665395 ~ 6673458 (+)
G62431 NA non-coding downstream 548351 6734481 ~ 6734828 (+)
c7h12orf75 NA other upstream 188857 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 215116 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 417066 5740555 ~ 5765785 (+)
G61575 NA other upstream 2878853 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 4247352 1921395 ~ 1935499 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 665100 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 2215710 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 2340088 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 3245369 9431499 ~ 9440564 (+)
G63051 NA other downstream 3460449 9646579 ~ 9650087 (+)

Expression


Co-expression Network