G62400


Basic Information

Item Value
gene id G62400
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6430591 ~ 6531823 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU84138
TTGTGGTGGAAAAATAatgacaggaagaaagaaatattcagagtctctgagtcttgatcagaatgagtaacaagatttattgagAAGCCACACGTAATGAATACAGAGTGAACTCCTGCCTTGCAAGAGGTGCCAAGCTCTCTTTATACCTTTTAGATCCTCCCATCCCTTACTTCCCAATTATGGGCACAGTGCCACCATTGTGACACGTCAACTTCTTCTGACATGTGATATGACATAATCCCTTAGTGAGCATATCAGGCTGGTTCTCAAAACATTGCAAGCAGAAAGGAAGATGACCCTGGCGCCAGAATTTGTAGAACAACTGTGACGTGCATTCcttaacacatacacatagcCAGATAGAGAAAACTCTTACTCAGCATTTCAAAAAAGCTCACTGAGGGTAGAATGGTCACAGTACACATTATCATCGCATAGaacaaaaagtaatatcattaatagtcgtcattgtttatgaatcatcacacgtcattgattatgaatcatttcaataaacaccTTCCATCACAACAT
>TU84139
atatatatattttttttttaaaaacatctgatgtCTCCTTGTTtaaaagtcagaaagagagacccAATTCACTACAGCTCGTAATAGATACAATATTAAGTTTGTCAAATTAAACCTTTCCAAAGAAAGTAAGGTCTTTTCTTACTGGTTTCTAAAATCTACTATCCTCATTAAGAGAATCAAAAGATCAGCATAGACTGAGATACATGAGAACCACTAGAGAAATTAGAtatgtgtattctttaaatctcATTCAGCTGAGACTGAGCTGAAATCAGTctcaataaaaaagaataataatagaaaaggcCTAAACCACATGAAGACAGAAGCTGTGTTCAGAAtggctcactcattaactctttcactatgtagcattttctatttactAAACGAATTATGGAACAACCAAACAataaaccatgtttgtcctgctctgaggacgTCTAATACAACAGCACTGCATTGcattatagtatattttggaatttctaAATTTTGTGATGCATTAGGTTTTTCATAGTGAACTATATAGGGAACAGAATGTACTGCTGTGGTTTTAAACAGTATTGCAAAAATGGTTTTacactatatagtgcactatttctgGAATAGGGAGCGATTctgacacagccacacacacattatattcaTCATTAGATTCGCTTACAGAATATCAGAGTTAGACAAATGTTagaaacatacacacttacacacacgcacagacacacacacacacacacacacaccaaatgtgATAGAAGATAGCAGAGAAGAGATgttttgtctatctctctcactgctttatTCAACAcacgcagaaacacacacacacacattgtatcaAAAGCCTGGAATCCTCATCTCTTTTCTGTTTCAATCAGGGATGACTTTCACAATGTGGACATTTGTACATAACTCATCACTACTATTTAAACATGAAGCAGTCTCACATATTCACTAAACTGCcatcctcagaattctacagcATTTTCCATAAAGATAATGAAACATGTTACATTGAACAGTTCCAGCATGGCTCAATATTCTGCCctactttaatatatgtatattgggTTAATATGCTAATGATTCCAAACCTTTGAACAacactacataaacacacacacacacagacatacacatatAGTCTTGGCTCATTTGATTGAAAAGAGCTGCGTCATGAATTTTTGGATTAAATTTCAATTCTTTAGTTACTTGGGATCCCATTTTTGTTCTCTCATTCGATTTTAATGACTCAGAGTAATTTAGCCCCAATAATCACGTCTCACCTTCCTTCTTCTATCCCTGCTTAATACACAATCAGTACCCTGTactattatagtattatttatGCACTCCTCCCCACGGTCCCGGGACCTATACTCTAATGACACGTCTATCAATAGAGGCCTCACGACC
>TU84143
agacacacacacacacacacactatttctgGAATAGGGAGCGATTctgacacagccacacacacattatattcaTCATTAGATTCGCTTACAGAATATCAGAGTTAGACAAATGTTagaaacatacacacttacacacacgcacagacacacacacacacacacacacaccaaatgtgATAGAAGATAGCAGAGAAGAGATgttttgtctatctctctcactgctttatTCAACAcacgcagaaacacacacacacacattgtatcaAAAGCCTGGAATCCTCATCTCTTTTCTGTTTCAATCAGGGATGACTTTCACAATGTGGACATTTGTACATAACTCATCACTACTATTTAAACATGAAGCAGTCTCACATATTCACTAAACTGCcatcctcagaattctacagcATTTTCCATAAAGATAATGAAACATGTTACATTGAACAGTTCCAGCATGGCTCAATATTCTGCCctactttaatatatgtatattgggTTAATATGCTAATGATTCCAAACCTTTGAACAacactacataaacacacacacacacagacatacacatatAGTCTTGGCTCATTTGATTGAAAAGAGCTGCGTCATGAATTTTTGGATTAAATTTCAATTCTTTAGTTACTTGGGATCCCATTTTTGTTCTCTCATTCGATTTTAATGACTCAGAGTAATTTAGCCCCAATAATCACGTCTCACCTTCCTTCTTCTATCCCTGCTTAATACACAATCAGTACCCTGTactattatagtattatttatGCACTCCTCCCCACGGTCCCGGGACCTATACTCTAATGACACGTCTATCAATAGAGGCCTCACGACCAGGCTAGTCTTCTCTTTACTTTAaagatatatttacatacatcaATAAAGGCCTCACGACCAGGCTAGTCTTGTACACCGTCATGTAACTATTCACTGTCCAGGGCGGAGTGCTGAAGGAAGGATGGAGGggagtaaattaatttaagaacaattgtttacatttaaatttcctTAATGAGTAAATTAGTTAACCTGTCACTCACCACCAATGTTTTGTTGATGAGGCCTGGATTTTGCGAGTGAGGGGTGAGAGGCCGCACCTACCCCCGCGGTACTTCGTCCTTATTCTGTGGAATTTTCCCTTGCTTCTGGGGCCCAGCTGTTTTGCTGGAGAGCGTCCTTGGCAGGTGCTTAGTCTCTCCCCCTCCGCCGCAAGACCATGCTCATCCTGTTCGTGACGCCAAATTGTGGTGGAAAAATAatgacaggaagaaagaaatattcagagtctctgagtcttgatcagaatgagtaacaagatttattgagAAGCCACACGTAATGAATACAGAGTGAACTCCTGCCTTGCAAGAGGTGCCAAGCTCTCTTTATACCTTTTAGATCCTCCCATCCCTTACTTCCCAATTATGGGCACAGTGCCACCATTGTGACACGTCAACTTCTTCTGACATGTGATATGACATAATCCCTTAGTGAGCATATCAGGCTGGTTCTCAAAACATTGCAAGCAGAAAGGAAGATGACCCTGGCGCCAGAATTTGTAGAACAACTGTGACGTGCATTCcttaacacatacacatagcCAGATAGAGAAAACTCTTACTCAGCATTTCAAAAAAGCTCACTGAGGGTAGAATGGTCACAGTACACATTATCATCGCATAGaacaaaaagtaatatcattaatagtcgtcattgtttatgaatcatcacacgtcattgattatgaatcatttcaataaacaccTTCCATCACAACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84138 False 537 lncRNA 0.39 2 6528509 6531823
TU84139 False 1422 lncRNA 0.35 2 6430591 6530879
TU84143 True 1787 lncRNA 0.40 2 6474432 6531823

Neighbor

gene id symbol gene type direction distance location
LOC103023466 twf1,twf1b,LOC107694256,LOC107582633,LOC107729862,LOC107587151,LOC108280122 coding upstream 4314 6409917 ~ 6426277 (+)
nell2 nell2b,LOC108439413,LOC108279511,LOC107587152,LOC105902601,LOC107725667,LOC107729859 coding upstream 96251 6216811 ~ 6334340 (+)
LOC111192904 NA coding upstream 415477 6012846 ~ 6015114 (+)
LOC107197570 LOC108442310 coding upstream 1007287 5421768 ~ 5423304 (+)
ifrd1 ifrd1,LOC108425389,LOC107726045,LOC107580056 coding upstream 1169040 5251133 ~ 5261551 (+)
LOC103021937 LOC108439409 coding downstream 69560 6601383 ~ 6632805 (+)
zcrb1 zcrb1 coding downstream 163767 6695590 ~ 6703894 (+)
LOC103021606 yaf2,LOC108439407,LOC102797593,LOC105018284 coding downstream 225731 6757554 ~ 6771361 (+)
LOC103047680 LOC108439417 coding downstream 250425 6782248 ~ 6793867 (+)
foxp2 foxp2 coding downstream 421193 6953016 ~ 7094083 (+)
G62386 NA non-coding upstream 34038 6396286 ~ 6396553 (+)
G62367 NA non-coding upstream 65965 6364337 ~ 6364626 (+)
G62311 NA non-coding upstream 244461 6182851 ~ 6186130 (+)
G62309 NA non-coding upstream 253086 6177224 ~ 6177505 (+)
G62287 NA non-coding upstream 258423 6171213 ~ 6172168 (+)
G62420 NA non-coding downstream 133572 6665395 ~ 6673458 (+)
G62431 NA non-coding downstream 202658 6734481 ~ 6734828 (+)
G62425 NA non-coding downstream 266517 6798340 ~ 6830009 (+)
LOC111192941 NA non-coding downstream 392355 6924178 ~ 6942785 (+)
G62471 NA non-coding downstream 570457 7102280 ~ 7102659 (+)
c7h12orf75 NA other upstream 436597 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 462856 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 664806 5740555 ~ 5765785 (+)
G61575 NA other upstream 3126593 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 4495092 1921395 ~ 1935499 (+)
G62455 gpr85,LOC106576049,LOC107580073 other downstream 319407 6851230 ~ 6855762 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 1870017 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 1994395 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 2899676 9431499 ~ 9440564 (+)
G63051 NA other downstream 3114756 9646579 ~ 9650087 (+)

Expression


Co-expression Network