G62404


Basic Information

Item Value
gene id G62404
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6430582 ~ 6531823 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU84147
ATGTTGTGATGGAAggtgtttattgaaatgattcataatcaatgacgtgtgatgattcataaacaatgacgactattaatgatattactttttgttCTATGCGATGATAATGTGTACTGTGACCATTCTACCCTCAGTGAGCTTTTTTGAAATGCTGAGTAAGAGTTTTCTCTATCTGgctatgtgtatgtgttaagGAATGCACGTCACAGTTGTTCTACAAATTCTGGCGCCAGGGTCATCTTCCTTTCTGCTTGCAATGTTTTGAGAACCAGCCTGATATGCTCACTAAGGGATTATGTCATATCACATGTCAGAAGAAGTTGACGTGTCACAATGGTGGCACTGTGCCCATAATTGGGAAGTAAGGGATGGGAGGATCTAAAAGGTATAAAGAGAGCTTGGCACCTCTTGCAAGGCAGGAGTTCACTCTGTATTCATTACGTGTGGCTTctcaataaatcttgttactcattctgatcaagactcagagactctgaatatttctttcttcctgtcatTATTTTTCCACCACAATTTGGCGTCACGAACAGGATGAGCATGGTCTTGCGGCGGAGGGGGAGAGACTAAGCACCTGCCAAGGACGCTCTCCAGCAAAACAGCTGGGCCCCAGAAGCAAGGGAAAATTCCACAGAATAAGGACGAAGTACCGCGGGGGTAGGTGCGGCCTCTCACCCCTCACTCGCAAAATCCAGGCCTCATCAACAAAACATTGGTGGTGAGTGACAGGTTAACTAATTTACTCATTAaggaaatttaaatgtaaacaattgttcttaaattaatttactccCCTCCATCCTTCCTTCAGCACTCCGCCCTGGACAGTGAATAGTTACATGACGGTGTACAAGACTAGCCTGGTCGTGAGGCCTTTATtgatgtatgtaaatatatcttTAAAGTAAAGAGAAGACTAGCCTGGTCGTGAGGCCTCTATTGATAGACGTGTCATTAGAGTATAGGTCCCGGGACCGTGGGGAGGAGTGCataaataatactataatagtACAGGGTACTGATTGTGTATTAAGCAGGGATAGAAGAAGGAAGGTGAGACGTGATTATTGGGGCTAAATTACTCTGAGTCATTAAAATCGAATGAGAGAACAAAAATGGGATCCCAAGTAACTAAAGAATTGAAATTTAATCCAAAAATTCATGACGCAGCTCTTTTCAATCAAATGAGCCAAGACTatatgtgtatgtctgtgtgtgtgtgtgtttatgtagtgtTGTTCAAAGGTTTGGAATCATTAGCATATTAAcccaatatacatatattaaagtagGGCAGAATATTGAGCCATGCTGGAACTGTTCAATGTAACATGTTTCATTATCTTTATGGAAAATgctgtagaattctgaggatgGCAGTTTAGTGAATATGTGAGACTGCTTCATGTTTAAATAGTAGTGATGAGTTATGTACAAATGTCCACATTGTGAAAGTCATCCCTGATTGAAACAGAAAAGAGATGAGGATTCCAGGCTTTtgatacaatgtgtgtgtgtgtgtttctgcgtgTGTTGAataaagcagtgagagagatagacaaaacATCTCTTCTCTGCTATCTTCTATcacatttggtgtgtgtgtgtgtgtgtgtgtgtctgtgcgtgtgtgtaagtgtgtatgtttctAACATTTGTCTAACTCTGATATTCTGTAAGCGAATCTAATGAtgaatataatgtgtgtgtggctgtgtcagAATCGCTCCCTATTCcagaaatagtgcactatatagtgtAAAACCATTTTTGCAATACTGTTTAAAACCACAGCAGTACATTCTGTTCCCTATATAGTTCACTATGAAAAACCTAATGCATCACAAAATTtagaaattccaaaatatactataatgCAATGCAGTGCTGTTGTATTAGAcgtcctcagagcaggacaaacatggtttatTGTTTGGTTGTTCCATAATTCGTTTagtaaatagaaaatgctacatagtgaaagagttaatgagtgagccaTTCTGAACACAGCTTCTGTCTTCATGTGGTTTAGgccttttctattattattcttttttattgagACTGATTTCAGCTCAGTCTCAGCTGAATgagatttaaagaatacacataTCTAATTTCTCTAGTGGTTCTCATGTATCTCAGTCTATGCTGATCTTTTGATTCTCTTAATGAGGATAGTAGATTTTAGAAACCAGTAAGAAAAGACCTTACTTTCTTTGGAAAGGTTTAATTTGACAAACTTAATATTGTATCTATTACGAGCTGTAGTGAATTgggtctctctttctgacttttaAACAAGGAGacatcagatgtttttaaaaaatatatatatatatatata

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84147 True 2371 lncRNA 0.38 2 6430582 6531823

Neighbor

gene id symbol gene type direction distance location
LOC103029290 prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933 coding downstream 286374 6139962 ~ 6144208 (-)
nuak1 nuak1,nuak1a,LOC108439414,LOC107587153,LOC107729860,LOC107690659,LOC107582835 coding downstream 310816 6096340 ~ 6119766 (-)
abcc9 abcc9,LOC108439416 coding downstream 704299 5664901 ~ 5726283 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 coding downstream 767301 5658448 ~ 5663281 (-)
cmas NA coding downstream 777559 5644509 ~ 5653023 (-)
LOC111192868 NA coding upstream 190279 6722102 ~ 6723530 (-)
LOC111192905 NA coding upstream 203334 6735157 ~ 6736574 (-)
gpr85 gpr85,LOC106576049,LOC107580073 coding upstream 319345 6851168 ~ 6855742 (-)
LOC103043330 NA coding upstream 399340 6931163 ~ 6955225 (-)
tfec tfec coding upstream 930004 7461827 ~ 7533411 (-)
G62380 NA non-coding downstream 52168 6377947 ~ 6378414 (-)
G62375 NA non-coding downstream 56388 6373695 ~ 6374194 (-)
G62363 NA non-coding downstream 66702 6358661 ~ 6363880 (-)
G62361 NA non-coding downstream 75477 6354803 ~ 6355105 (-)
G62354 NA non-coding downstream 94811 6335523 ~ 6335771 (-)
G62412 NA non-coding upstream 30249 6562072 ~ 6562297 (-)
G62486 NA non-coding upstream 163835 6695658 ~ 6698614 (-)
G62492 NA non-coding upstream 180240 6712063 ~ 6712880 (-)
LOC111192939 NA non-coding upstream 204760 6736583 ~ 6738038 (-)
G62505 NA non-coding upstream 226106 6757929 ~ 6758476 (-)
G62377 NA other downstream 55602 6374469 ~ 6374980 (-)
G61942 NA other downstream 1808005 4622213 ~ 4622577 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other downstream 2004426 4335118 ~ 4426156 (-)
cdpf1 cdpf1,LOC107695897 other downstream 2584113 3840601 ~ 3846469 (-)
G61676 NA other downstream 2772314 3650845 ~ 3658268 (-)
pphln1 pphln1,LOC108279830 other upstream 101187 6633010 ~ 6695389 (-)
G62484 NA other upstream 139787 6671610 ~ 6737948 (-)
LOC111192938 NA other upstream 196051 6727874 ~ 6733125 (-)
LOC111192940 NA other upstream 255519 6787342 ~ 6859670 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other upstream 1085712 7617535 ~ 7619432 (-)

Expression


Co-expression Network