G62409 (pus7l)


Basic Information

Item Value
gene id G62409
gene name pus7l
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6440953 ~ 6444237 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU84156
gtCAGGCTGTCTGCATGTAGTCTGCAATAGTTTGACAAGAGGAATACTATTTTTATGTACAAACAGAAGGTCTAATActgatttgttaaaaaaatatatacagatacaTTTAACAGACAATCTCTCAGCCTAAACGgcaaaaatgtgtttagttcATGCTTTACTGTTATTACCATATTACAGCTTTCATTCCTTAcaggtaactttttttttgcaggaatctgtaaaaaaaaaaaaaaaacttttccacATCTCCAATGTTAAAACTTGTGACTTGAAGTGTGAGAAGCAGAAAATGATTCAACTACTAAAAATTGGAGCATATTTTGCTTCTCACCATACAAACAATCCCAAAATGACATTCAGTGACAACTCTGAAATGGGATTGCCAGTTTCTTGTTCAGAAATCATCAGCATATTCAGTtgctttgatttgatttaatgtttttctgtgtgtccTTTAGATCAGCTCTGCAACGTTGAAATAGAAGAAAGGACAAAAACAACTGTGTTTATTTTGGaattcttttctttgcatttgctTGTGCTAAAGGATCATCTTATGAATATTTGCTGCTCACaaataagttttggaaaaaaatgtctTACATTTGCACAGTTCTGTATTAGAAATAATGAATACTTTGCctcaatcccattttaccccttggccctactatttacccctacccctctgttttgcacgtGCACGCCAAGGTGTTTGTTAGCCCtttatacggagatttttctgaggcacacttcaaaccaagtatgagaatcactggtaagatagcagaacaagcaaccaaagaaacacattaatgtaggtattttccttgttaaaagtgacgatGAGCACTATATTACCAGATATTTTAATgagtagtttcaatgttttattggctatattcttcataacaagcttaAAAAAGATTGCTaatagtttgtctcagtagctagctggctagctaacttttccattccaccttaaatggcatAAAAGActgcaggggctgcagcatttaaggcagagtgaaaacattaaataaaataaaagctaaccAACGCTTATTTCAGCTTTTCTTTACAGAGGAATTAAGTAATGGACAATAATAACTAATTTCTGCCCCAtttcccccctttctgaagatatATGATGCCCTAacgttaactagttaaccagcagctaggttattGAACTCTAGCACTCCTGATGTCATGTCAGTGGTTAAAGGGTCATCCATTTCCACCCCTTTCTTCTTGTATTCTAAAGGcttacactcgaaaagaaggggttagttaggggtaagtggtaaggccaaggggtgaaatgggattgggcctttgtATTACTTTTGAATCAAGTTCATGTAATCCAACCATCCCATCTAGTGGCCACTTGATGAAATGACATGAAATTAAAGCAAAATGAAACCACTGACATTTACAAATCACACTTCATAATTTCCCTGAGACAGACTGTGGCGTAGCAGGAAGAATCAAGATCAAAAGACAGTTTTAAGGCAGTTGTGGAGGGAGGGGGTGACGGCTCTGTGAATGATTCTTCTTCAGTAGTCTGTAGGCTGTAGGTGATGTTATGAGGATAAGCCAGTAAGGGCCGGTAGCAGCCAGGCACGTTGAGTTTGAGTGAGGTGATTCTGAATCTGCAGGAACCCAGACCGTCCTGTGATAGCCGGTCCTGATACCATTTACCAAGTACATTCTCTGGATATTTTACAGTGTTGCCGGGCATGGGGAGGACCACCT
>TU84157
ctcttaagaaaaaaataatataaaacttaatttataGTTTCATtcacaatgattttttttaaacttgtgtCAGGCTGTCTGCATGTAGTCTGCAATAGTTTGACAAGAGGAATACTATTTTTATGTACAAACAGAAGGTCTAATActgatttgttaaaaaaatatatacagatacaTTTAACAGACAATCTCTCAGCCTAAACGgcaaaaatgtgtttagttcATGCTTTACTGTTATTACCATATTACAGCTTTCATTCCTTAcaggtaactttttttttgcaggaatctgtaaaaaaaaaaaaaaaacttttccacATCTCCAATGTTAAAACTTGTGACTTGAAGTGTGAGAAGCAGAAAATGATTCAACTACTAAAAATTGGAGCATATTTTGCTTCTCACCATACAAACAATCCCAAAATGACATTCAGTGACAACTCTGAAATGGGATTGCCAGTTTCTTGTTCAGAAATCATCAGCATATTCAGTtgctttgatttgatttaatgtttttctgtgtgtccTTTAGATCAGCTCTGCAACGTTGAAATAGAAGAAAGGACAAAAACAACTGTGTTTATTTTGGaattcttttctttgcatttgctTGTGCTAAAGGATCATCTTATGAATATTTGCTGCTCACaaataagttttggaaaaaaatgtctTACATTTGCACAGTTCTGTATTAGAAATAATGAATACTTTGCctcaatcccattttaccccttggccctactatttacccctacccctctgttttgcacgtGCACGCCAAGGTGTTTGTTAGCCCtttatacggagatttttctgaggcacacttcaaaccaagtatgagaatcactggtaagatagcagaacaagcaaccaaagaaacacattaatgtaggtattttccttgttaaaagtgacgatGAGCACTATATTACCAGATATTTTAATgagtagtttcaatgttttattggctatattcttcataacaagcttaAAAAAGATTGCTaatagtttgtctcagtagctagctggctagctaacttttccattccaccttaaatggcatAAAAGActgcaggggctgcagcatttaaggcagagtgaaaacattaaataaaataaaagctaaccAACGCTTATTTCAGCTTTTCTTTACAGAGGAATTAAGTAATGGACAATAATAACTAATTTCTGCCCCAtttcccccctttctgaagatatATGATGCCCTAacgttaactagttaaccagcagctaggttattGAACTCTAGCACTCCTGATGTCATGTCAGTGGTTAAAGGGTCATCCATTTCCACCCCTTTCTTCTTGTATTCTAAAGGcttacactcgaaaagaaggggttagttaggggtaagtggtaaggccaaggggtgaaatgggattgggcctttgtATTACTTTTGAATCAAGTTCATGTAATCCAACCATCCCATCTAGTGGCCACTTGATGAAATGACATGAAATTAAAGCAAAATGAAACCACTGACATTTACAAATCACACTTCATAATTTCCCTGAGACAGACTGTGGCGTAGCAGGAAGAATCAAGATCAAAAGACAGTTTTAAGGCAGTTGTGGAGGGAGGGGGTGACGGCTCTGTGAATGATTCTTCTTCAGTAGTCTGTAGGCTGTAGGTGATGTTATGAGGATAAGCCAGTAAGGGCCGGTAGCAGCCAGGCACGTTGAGTTTGAGTGAGGTGATTCTGAATCTGCAGGAACCCAGACCGTCCTGTGATAGCCGGTCCTGATACCATTTACCAAGTACATTCTCTGGATATTTTACAGTGTTGCCGGGCATGGGGAGGACCACCT

Function

symbol description
pus7l Predicted to enable pseudouridine synthase activity. Predicted to be involved in pseudouridine synthesis. Predicted to act upstream of or within RNA modification. Predicted to be active in nucleus. Orthologous to human PUS7L (pseudouridine synthase 7 like).

NR:

description
PREDICTED: pseudouridylate synthase 7 homolog-like protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84156 False 1767 lncRNA 0.38 2 6440953 6443232
TU84157 True 1835 lncRNA 0.37 3 6440953 6444237

Neighbor

gene id symbol gene type direction distance location
LOC103029290 prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933 coding downstream 296745 6139962 ~ 6144208 (-)
nuak1 nuak1,nuak1a,LOC108439414,LOC107587153,LOC107729860,LOC107690659,LOC107582835 coding downstream 321187 6096340 ~ 6119766 (-)
abcc9 abcc9,LOC108439416 coding downstream 714670 5664901 ~ 5726283 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 coding downstream 777672 5658448 ~ 5663281 (-)
cmas NA coding downstream 787930 5644509 ~ 5653023 (-)
LOC111192868 NA coding upstream 277865 6722102 ~ 6723530 (-)
LOC111192905 NA coding upstream 290920 6735157 ~ 6736574 (-)
gpr85 gpr85,LOC106576049,LOC107580073 coding upstream 406931 6851168 ~ 6855742 (-)
LOC103043330 NA coding upstream 486926 6931163 ~ 6955225 (-)
tfec tfec coding upstream 1017590 7461827 ~ 7533411 (-)
G62380 NA non-coding downstream 62539 6377947 ~ 6378414 (-)
G62375 NA non-coding downstream 66759 6373695 ~ 6374194 (-)
G62363 NA non-coding downstream 77073 6358661 ~ 6363880 (-)
G62361 NA non-coding downstream 85848 6354803 ~ 6355105 (-)
G62354 NA non-coding downstream 105182 6335523 ~ 6335771 (-)
G62412 NA non-coding upstream 117835 6562072 ~ 6562297 (-)
G62486 NA non-coding upstream 251421 6695658 ~ 6698614 (-)
G62492 NA non-coding upstream 267826 6712063 ~ 6712880 (-)
LOC111192939 NA non-coding upstream 292346 6736583 ~ 6738038 (-)
G62505 NA non-coding upstream 313692 6757929 ~ 6758476 (-)
G62377 NA other downstream 65973 6374469 ~ 6374980 (-)
G61942 NA other downstream 1818376 4622213 ~ 4622577 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other downstream 2014797 4335118 ~ 4426156 (-)
cdpf1 cdpf1,LOC107695897 other downstream 2594484 3840601 ~ 3846469 (-)
G61676 NA other downstream 2782685 3650845 ~ 3658268 (-)
pphln1 pphln1,LOC108279830 other upstream 188773 6633010 ~ 6695389 (-)
G62484 NA other upstream 227373 6671610 ~ 6737948 (-)
LOC111192938 NA other upstream 283637 6727874 ~ 6733125 (-)
LOC111192940 NA other upstream 343105 6787342 ~ 6859670 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other upstream 1173298 7617535 ~ 7619432 (-)

Expression


Co-expression Network