G62455 (gpr85,LOC106576049,LOC107580073)


Basic Information

Item Value
gene id G62455
gene name gpr85,LOC106576049,LOC107580073
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6851230 ~ 6855762 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU84211
GCAAATGCAATCCTAACTTAAACAGTACTCACGTCCGGGACTTCAAAATGAAAGACTCACAAACTTACACACTATCTACctataatatacaaaaaaatacataataaatattaaaatggcCACAAGAGAAAAAAGTAAGTTAATCAAAACAATCAGTAGAGAGCAAATGTCGGGAAAGTATAAACAAGACGCTGTGCCttaaatacaatgttttttttgttgttttttctgttaattttttttacaaattgtgCAAGATTTTATACTAAGGCTCTGGTCTTGACGTGACAGCTGTCCAgcttacacactcactcagatgcacgcagccacacacacacatccacacacacacacacacatatccacaCACCACAGGCTCTCTGCTCCCTGCATTCTGCGCACTCAGTGGGGTGTAGGTGTGTAGCAAACCGTTGCAGGATAAGAAATGGGGCGTCTGGTGCAATGCCAGTGTTGATGCTCATGAAAGTGGATatgcattaaaaatgaacatGCACTTCACATTAATGTGAAAACACTCCCTATATGCCTGGAGACATTGTAGAGGAGCACATCTGAAAATCagaccaccccccccccccctcctctacCCAACCCtcccacctacccacccacccaaaaacagaaactgaaaataaacatCATAACCATTAAGGCAAGAACATCTGGAGTGGTATCAGCAATACTGTAACAATATGTCAGTGTTCAGGTACATGGATGATATGAAACATTTAAACTGGTTCTCCACTGTCATTTTAGCACAAGGTTCTCAAGAGCAACTTTTAAAATCCAAACATTAAGACTGTTAGAAACCGAGATAAGAAAAGAACATTGCCAGACACGGACATACTGCATGGATCATAAAACTACAGGAAATAATTTAAGTTGCAATTGGAAAACCACACATCAGTATCCATTAAATCCCGCCCCCTCCCCCGCTCGTCCCCAGaaagttggaaaaaaagaaaagatatcACTTACATTTAAACCAATTTTATCCTCTTGTGAAGGTGTATTCCAACAGAGTCACCCCacatgttttgtttacttacagtGAATGAGAAGTCTGTTGCAAATGAAAGCATTCATATTTCAGTttggggagagagaaaaaagagacatcCTTGCAATGCAACTCAGCAAAAAAAGCATCTTTTTAACTTCTTTTATAACTTAGTGcaactttttaaacacaaaaccaTTCCAGTGATTCCCAGAAGGAATTCAGATTTGTTTTCTGTCATGTACACCTTGAGTCTTCAACATATCCAAATCAAAAGGGTCAGTCTTAACGTTAATATCacatttctttccttctttgtttttctttcgttttttctttctttcatttttttctttttctttttttttgcttatctGCTTTAAAACAGCCTTCTGCAGCAGTTGTTTACTAGAACATAAACACAGGAGGGGTCCTCCACTCcctgattatttttattccCTTGGAGCTTCACGTCTGGCGCTCATTCACATCAAGAGGTGTGTATGATTGACAGTTCCACATCAGGCCTACAGGGTGGGGGGCTGGGGTGCGTGGGGAGTGGGGTTATAGtgaagaggagagaaaaggaggagaGCTATACAACGGGATGTATCCCTGACCAATCAGGGCAGCCAAAAAATACCCAagaccaaaaaagaaaaaacccaAGCCTTCATATAACACAGTAGGGTTCCCTAGGTAACCTGGATTTTCTGCAGTAGAGGAGCGTGGTGCTGAAGCATCGTCTGAGCTCCCGGTTGGAGAAAATGCAGATGAACGGGTTGACTCCCGCCTGAGCAAAGCTCATCCACACAGCTGCGGTGAGGTAGCCTCCAGGCACCACGGGGCCCCTGGCGAACACCCTCCAGTAGCAGGCCACCAGATAGGGCCCCCACAGGCTCAGGAAGAAGAAGGTCATGATGTAAAACATCCTGCTTATCCTCTTTTCAGTCTTGAACTCGTCCAGCACCAGCAGACGCCTGCGGCCTGCCGCATTGCTGTTCTGACGGATCCCCAGCAGGGTCGGAGGCGTGGGGCCTCGGCCGAAGCCGGCCAGCCAGTTGGCCGCGGCCTGGCCGCTGGCTCCCGGACCGTGGAAGGTCCAGTTCTGGCTGACCGCTGGCACAAACTGGACGGGTTTCATCTTCCGACGGTCGtgaacaaaaaagatgagcttGAGGTAGACAAGCTGGGTGGCCAGGAGGATGAGGGCGAGCAGCAGCATGAAGCCCAACGAGTCGTTGGCGCGGAAGGAGCGGTGCTGGAAGGTGCACTGGTCCTCCTCGCGGATGAACGAGTAGGTGCCTACGTCCAGCACCGGCGGGAAAGCCATGGCCACCGACAACGTCCACACCATGCAGATGACGGCCAGGCAGGTCCAGAAGGTCAGCCTCTTTGTGTAGAAGCGGTGGTGGGCGATGGCCAGGTAGCGTGTCACGCTGATGCAGAACAGCATGAAGGCCGTGTGGAAACAGGAAAGCACGCCCAAGAAGGCGATCACTTTGCAGGTGAGCGTGCCGTACGTCCAGGCGGAGCCATTCTTGACCGAGGTGAACACAAAGGGGAAGCAGATGGCGGAGCGCAGGATGTCCGAGGCACACAGGTCCAGCAGAAAGTAGTAGGGTGCGCGGTGCAGGCTCTTGTCTTTGACCAGCAGGATGGAGATCAGGAGATTTCCGACCACCCCGACGCCGATGATGAAACCCAGGGAGGTCAGTTTAAGGAATGTGGCAAGCGGAGAGACATTCTGCAAGATGTTGTGGTCCCCTGCATGGCTATAGTTCGCCATAGATGGAGGAGGGATCATATAGATGATTAAAGCTTCAGCCAAGTATCATGATCTGGATGCAATGGGGAGCGATAGATCCATTTGGTGTGCTTTGAAGCAGATTCCAGCCTTGTTATCTGCCTCTCTTCTAAGGCATCCTTTGTTCCTTTGTCTCATCACACCTAAAAAAAATACCTGTTAACGCTGCCCTTTGTCTCCCCGCAGGTTATTTACATGGTAAGAGTCGCTTTGCCGTAAAAAAGCTCGCTTTTTCTCGCCTGCCCTTTTTCCCCCCACTGTGAATATACAGTAAGCGGCGCAGACGGAGCATGCGCACTGGCGCTGTTTGTGATCCTGGCCGCGTCTCGTCTCttgttgcagcagcagcatcagcatcagggCCGG

Function

symbol description
gpr85 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in central nervous system and retina. Orthologous to human GPR85 (G protein-coupled receptor 85).

NR:

description
probable G-protein coupled receptor 85

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84211 True 3194 TUCP 0.48 2 6851230 6855762

Neighbor

gene id symbol gene type direction distance location
LOC103047680 LOC108439417 coding upstream 57363 6782248 ~ 6793867 (+)
LOC103021606 yaf2,LOC108439407,LOC102797593,LOC105018284 coding upstream 79869 6757554 ~ 6771361 (+)
zcrb1 zcrb1 coding upstream 147336 6695590 ~ 6703894 (+)
LOC103021937 LOC108439409 coding upstream 218425 6601383 ~ 6632805 (+)
pus7l NA coding upstream 409656 6428006 ~ 6441574 (+)
foxp2 foxp2 coding downstream 97254 6953016 ~ 7094083 (+)
mdfic mdfic coding downstream 284089 7139851 ~ 7170640 (+)
arl1 arl1 coding downstream 693323 7549085 ~ 7553250 (+)
slc5a8 slc5a8 coding downstream 748139 7603901 ~ 7612947 (+)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 coding downstream 765052 7620814 ~ 7631378 (+)
G62425 NA non-coding upstream 21221 6798340 ~ 6830009 (+)
G62431 NA non-coding upstream 116402 6734481 ~ 6734828 (+)
G62420 NA non-coding upstream 177772 6665395 ~ 6673458 (+)
G62400 NA non-coding upstream 319407 6430591 ~ 6531823 (+)
G62386 NA non-coding upstream 454677 6396286 ~ 6396553 (+)
LOC111192941 NA non-coding downstream 68416 6924178 ~ 6942785 (+)
G62471 NA non-coding downstream 246518 7102280 ~ 7102659 (+)
G62576 NA non-coding downstream 339014 7194776 ~ 7194982 (+)
G62579 NA non-coding downstream 362721 7218483 ~ 7218703 (+)
G62581 NA non-coding downstream 378362 7234124 ~ 7234439 (+)
c7h12orf75 NA other upstream 857236 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 883495 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 1085445 5740555 ~ 5765785 (+)
G61575 NA other upstream 3547232 3296546 ~ 3303998 (+)
LOC103036328 tmem178b,LOC107725619,LOC107694293,LOC107590312,LOC107655551 other upstream 4915731 1921395 ~ 1935499 (+)
rab19 rab19,LOC108425368,LOC106523538 other downstream 1546078 8401840 ~ 8415039 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 1670456 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 2575737 9431499 ~ 9440564 (+)
G63051 NA other downstream 2790817 9646579 ~ 9650087 (+)
G63432 NA other downstream 5612288 12468050 ~ 12468902 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G228221 gpr85,LOC106576049 non-coding NC_053134.1 CM020931.1 16216115 ~ 16224149 (-)
bowfin (Amia calva) AMCG00006558 gpr85,LOC106576049 coding CM030134.1 CM030134.1 8727643 ~ 8728326 (+)