G62484


Basic Information

Item Value
gene id G62484
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6671610 ~ 6737948 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU84254
GTGGAAGCTGGAAGACCCagatgcacatttttttttagaaaatgcaCTGAAGTGGAAGATgactctgtaaaaaaagaacaagaagcCGATGTTTGCAACACTCAGTCTTTTGAACATGACGCCAGTCTTTTAGGAGAGAAAATGGAAACAGGATTTCCATTTCTTCAATCCTCTGAAGAAACATGTGACTCTGAAAATCCAGAACCTGATCCTACAAAGCAAAATACCTTCCTGTTTATACATCAGAATAAAGAGCAGCAAAGACTTCTGCAGCGTTATGGGGAAATGGTCCTTCTAGATGCTACATACAAGACAAGCAAGTACGCATTACCACTTTTTTTGGTAGTTGTGCGAACAAATGTGGGATATAAACCAGTTGCAGAATTTATATGTGAAAGTGAAACCACTGAAGCCATCTCCGAGGCcctcaaaattttaaaaaattggaATATGGAATGGAAAACCAAAATACTTTATGGTAGATTACTGTGAACAAGAATTGAAGGCACTTCAGTTGGTATTCCCCCAGGCACAGAAATACATTTGTGCTTTCCATCGGGAACAAGCCTGGATACGGTGGACAAGAGAAGAGATGGTGTAGAGCATTTGCTCCACATGGATTCAGCGTATCTGTAACAACAAACAATGGCATTGAAGCCATGAACAACTCACTGAAGAGCTTTTATTTGAAGCTTTCAAATACCGGAACAGTTTCCTCATTGGCTGAAACAGTTGTATGTGATTTTGTTCCAGAACATCTCCTGTCTTATGCAAAACTCAACTATTCCTATACCAGTGATTACAAAGCATACAGCAGTTATGTCCCTGATTTTTTGAGGAACCGTCCCAAAGATTTTGTCAAACACTGTCTTGAAAGAACAAATTCGTAACCTTGGGAAAGGATGCTTTCAGATTAAGAGTGAGCAGTCAGCTCAGTGGTATTGTGTGGATCTGGGAGATGACCAGAGATTTCCATCTTGTGAGTGTCCCTCCTTCAGTTAACATTTCTGCCCTGCAAACATCTGTTTGccatttttaataattcagaATATACATGGACCATGTTGAGTTCCAAGTACACAAACAGTCCATATGTGACATTAGATGTGGATGCTGTGTTAAGTGAAACCCAGAATGGCCAAGCAGAGAATGCAGTGGATGAAGACACAGATtgtatctctttattttccacCAAGGAACACTCCATTCAAAAGACATACCCGAGGTGTACTGAAAATAATCCAAGCAATGCCTGTGTTAACAGTGCTCAGCAATTCCTGCGAGAAAAGCTGAAGATTCTTCAGGATGTTTCATACCTCTGCAGAGATACAAAAGCATTGAGTGACGCTGCTGCAGTTGTACATAGTTTGGCAGACAACTTGAAAAGTTATATCCCAAAAGAAAACAGCCTGCCACTCATCAGCACAACACAAGAGACTGCAAAGCAAAAACTACGCAAATTACCAAAACAGCGCAAAAAGATACAGAGTCAAGCTAGAAAAACAAGATTTGGAAACAACTACAGATGTGTACCATACAGCACCCCGTGTCCCAGCA
>TU84255
GTGGAAGCTGGAAGACCCagatgcacatttttttttagaaaatgcaCTGAAGTGGAAGATgactctgtaaaaaaagaacaagaagcCGATGTTTGCAACACTCAGTCTTTTGAACATGACGCCAGTCTTTTAGGAGAGAAAATGGAAACAGGATTTCCATTTCTTCAATCCTCTGAAGAAACATGTGACTCTGAAAATCCAGAACCTGATCCTACAAAGCAAAATACCTTCCTGTTTATACATCAGAATAAAGAGCAGCAAAGACTTCTGCAGCGTTATGGGGAAATGGTCCTTCTAGATGCTACATACAAGACAAGCAAGTACGCATTACCACTTTTTTTGGTAGTTGTGCGAACAAATGTGGGATATAAACCAGTTGCAGAATTTATATGTGAAAGTGAAACCACTGAAGCCATCTCCGAGGCcctcaaaattttaaaaaattggaATATGGAATGGAAAACCAAAATACTTTATGGTAGATTACTGTGAACAAGAATTGAAGGCACTTCAGTTGGTATTCCCCCAGGCACAGAAATACATTTGTGCTTTCCATCGGGAACAAGCCTGGATACGGTGGACAAGAGAAGAGATGGTGTAGAGCATTTGCTCCACATGGATTCAGCGTATCTGTAACAACAAACAATGGCATTGAAGCCATGAACAACTCACTGAAGAGCTTTTATTTGAAGCTTTCAAATACCGGAACAGTTTCCTCATTGGCTGAAACAGTTGTATGTGATTTTGTTCCAGAACATCTCCTGTCTTATGCAAAACTCAACTATTCCTATACCAGTGATTACAAAGCATACAGCAGTTATGTCCCTGATTTTTTGAGGAACCGTCCCAAAGATTTTGTCAAACACTGTCTTAAAGCTATTAAAGCAGCT

Function

NR:

description
PREDICTED: transitional endoplasmic reticulum ATPase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84254 True 1557 TUCP 0.40 3 6735163 6737948
TU84255 False 890 TUCP 0.39 3 6671610 6737948

Neighbor

gene id symbol gene type direction distance location
LOC103029290 prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933 coding downstream 527402 6139962 ~ 6144208 (-)
nuak1 nuak1,nuak1a,LOC108439414,LOC107587153,LOC107729860,LOC107690659,LOC107582835 coding downstream 551844 6096340 ~ 6119766 (-)
abcc9 abcc9,LOC108439416 coding downstream 945327 5664901 ~ 5726283 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 coding downstream 1008329 5658448 ~ 5663281 (-)
cmas NA coding downstream 1018587 5644509 ~ 5653023 (-)
gpr85 gpr85,LOC106576049,LOC107580073 coding upstream 113220 6851168 ~ 6855742 (-)
LOC103043330 NA coding upstream 193215 6931163 ~ 6955225 (-)
tfec tfec coding upstream 723879 7461827 ~ 7533411 (-)
utp20 utp20,LOC107583990,LOC107576235,LOC107735256 coding upstream 815317 7553265 ~ 7602288 (-)
LOC103047295 LOC108425379,LOC108280009 coding upstream 1032788 7770736 ~ 7801165 (-)
G62412 NA non-coding downstream 109313 6562072 ~ 6562297 (-)
G62404 NA non-coding downstream 139787 6430582 ~ 6531823 (-)
G62409 pus7l non-coding downstream 227373 6440953 ~ 6444237 (-)
G62380 NA non-coding downstream 293196 6377947 ~ 6378414 (-)
G62375 NA non-coding downstream 297416 6373695 ~ 6374194 (-)
G62505 NA non-coding upstream 19981 6757929 ~ 6758476 (-)
G62558 NA non-coding upstream 364127 7102075 ~ 7102306 (-)
G62582 NA non-coding upstream 496255 7234203 ~ 7234439 (-)
G62584 NA non-coding upstream 499243 7237191 ~ 7240299 (-)
G62592 NA non-coding upstream 605317 7343265 ~ 7343499 (-)
G62377 NA other downstream 296630 6374469 ~ 6374980 (-)
G61942 NA other downstream 2049033 4622213 ~ 4622577 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other downstream 2245454 4335118 ~ 4426156 (-)
cdpf1 cdpf1,LOC107695897 other downstream 2825141 3840601 ~ 3846469 (-)
G61676 NA other downstream 3013342 3650845 ~ 3658268 (-)
LOC111192940 NA other upstream 49394 6787342 ~ 6859670 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other upstream 879587 7617535 ~ 7619432 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other upstream 1428537 8166485 ~ 8173816 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 2880713 9618661 ~ 9622788 (-)
G63217 NA other upstream 3576851 10314799 ~ 10411231 (-)

Expression


Co-expression Network