G62486


Basic Information

Item Value
gene id G62486
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6695658 ~ 6698614 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU84261
catgccacagcatctcaatctgATTTAGATCAGGAGTTTGACTAGTCCACTCCAGTCTTCTACAGCAAGTCctgaaacagcaaaacaacccagaccatcacactaccaccactatATTTTACTCTatgtatgatgttctttttctggaatgcagtgtttcttttatgccagatgtaaagggacacacaccttccaaaaagttcaatttttgcCTCGTCAGTCCACAGAGAATTATCCCAAAAGTCTCAGAGATCATCAAGATGGATTCTGGCACAATTAAGACAAGCCTTAcagtaaatgttatttttgcttAGCAGTggctcttggatgagtcgtcactGAGCTCTTGGGGTAATGTTGGTCGGGCAGCCACTCCtcggaaggttcaccactgtttcaCGTCTTTACCTTTGTGGGTAATGGCTCTTACTATGGTTTGCAGAAGTCCCTAAACTTTAGATCTTAAttactttctttttcctttgttCATGGATTTCCTGTGGATATTGGCATGATATAGCTTATCTTTTGAGTATTTTTTGATCTACTtcgctttgtcaggcaggttctatttaagtgatttattgattgagaacaggtgtggctgTAATCAGGCCTCGGTGTGGTTAGAGAAAATGAGCTCAGGTGTTATAAACCACAGTTATGTTTTAACGGttgttaaaacactttttcacacagggtcatgtaggtttggatttttttcccttaataatgaAAATTTCAGTTTGGAACGGCTGACAAAAAGCTTTGGGGACGGTTGTGAAATAAGTTAGCCTGGAGCCCTGGTTGTGCACTACAGAAAGTCAGGAAATCACTGTAATGCTTTACAtcacatatttaataataattttacaaaatatgAGCTACAATTAAACCCCAGCAGCTTACCTTATGCAGGTCGTTATTAGTCAGAGAAAACGGCAGATTGGAAACATAAACAGTGCTCTTGCTCGGTGCTAACCCGCCACTCATCTTGCttCAAGCAGAGAACGAATACAGCGCTGCGCCaacgtgtgtgtatgtctgtgttacGATGAAGTGCactttaactaactaacttagctACTTATTTAATCAAGCTAGATTAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84261 True 1111 lncRNA 0.40 2 6695658 6698614

Neighbor

gene id symbol gene type direction distance location
LOC103029290 prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933 coding downstream 551450 6139962 ~ 6144208 (-)
nuak1 nuak1,nuak1a,LOC108439414,LOC107587153,LOC107729860,LOC107690659,LOC107582835 coding downstream 575892 6096340 ~ 6119766 (-)
abcc9 abcc9,LOC108439416 coding downstream 969375 5664901 ~ 5726283 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 coding downstream 1032377 5658448 ~ 5663281 (-)
cmas NA coding downstream 1042635 5644509 ~ 5653023 (-)
LOC111192868 NA coding upstream 23488 6722102 ~ 6723530 (-)
LOC111192905 NA coding upstream 36543 6735157 ~ 6736574 (-)
gpr85 gpr85,LOC106576049,LOC107580073 coding upstream 152554 6851168 ~ 6855742 (-)
LOC103043330 NA coding upstream 232549 6931163 ~ 6955225 (-)
tfec tfec coding upstream 763213 7461827 ~ 7533411 (-)
G62412 NA non-coding downstream 133361 6562072 ~ 6562297 (-)
G62404 NA non-coding downstream 163835 6430582 ~ 6531823 (-)
G62409 pus7l non-coding downstream 251421 6440953 ~ 6444237 (-)
G62380 NA non-coding downstream 317244 6377947 ~ 6378414 (-)
G62375 NA non-coding downstream 321464 6373695 ~ 6374194 (-)
G62492 NA non-coding upstream 13449 6712063 ~ 6712880 (-)
LOC111192939 NA non-coding upstream 37969 6736583 ~ 6738038 (-)
G62505 NA non-coding upstream 59315 6757929 ~ 6758476 (-)
G62558 NA non-coding upstream 403461 7102075 ~ 7102306 (-)
G62582 NA non-coding upstream 535589 7234203 ~ 7234439 (-)
pphln1 pphln1,LOC108279830 other downstream 269 6633010 ~ 6695389 (-)
G62377 NA other downstream 320678 6374469 ~ 6374980 (-)
G61942 NA other downstream 2073081 4622213 ~ 4622577 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other downstream 2269502 4335118 ~ 4426156 (-)
cdpf1 cdpf1,LOC107695897 other downstream 2849189 3840601 ~ 3846469 (-)
LOC111192938 NA other upstream 29260 6727874 ~ 6733125 (-)
LOC111192940 NA other upstream 88728 6787342 ~ 6859670 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other upstream 918921 7617535 ~ 7619432 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other upstream 1467871 8166485 ~ 8173816 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 2920047 9618661 ~ 9622788 (-)

Expression


Co-expression Network