LOC111192938


Basic Information

Item Value
gene id LOC111192938
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6727874 ~ 6733125 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU84282
taccttattcAGATTGCCTGCGATGGATGTGACAAGTGGTTCCACCAGTCTTGTGTAGGGAACCCACCCGAAGAGGAGGAGTTCTTTTGCCAGTTATGCAAACACTAAATTGCACTTCCTATACAGTGACTGAACTAATTCAAGTTGAGGTAGTTGGTCCCAGTAACCTCACAATTACTTAAATGTAGATCAGCTGAGTGCTGAGAGCTTTCGGTCATGTGTGTTTATAATGCACTCAGCTGATCTTCATTTTACTAACTAGCACCAACTAccttgaattgaattaaaagcTTGGCACCTTTTCACGAGCTGGAGGACCCTATTTTACTTCAGAGCTGAACCCCACTCACCACTGCCCAGCTTTGTGGCCCTTGTCAATCAAGCTTTAGAGTGATTACAAGATTGTTAGTGACTAAAGAATGCTAGAAACTCTCATTTATGCACATCAGCTAAGATTGTTGATGATGGTAATAATGATGTGTGATGGGGAGAaacatattacattttaatttgacaaaattaaatgaaatgactaaattggggagaaaagatGTTTACACTCTTACATTGTTCCTTTTATCACGAGAAAGAcactgttttacacttttaaacatATTCACACTAAAAAGatgctgattatttttttaaatgaaagggGTTGATTTTGTAAGTGAAGCTGCTGAGTTAGCTTAGGATAAAGGATTTGCATGCTGAAGTCCTcctttgttttacattttacatctgGACGGGATTtgtcaaaaacattttgaagtaaaatagttatt
>XM_022671278.1
CAGCATAATGAAATCAGCGCACTTCCTTTCCCAGTAAATGGGAGCACATGATTGCCTGTCTTAGCAGATGGGAGgaccacagcacacacacacaaaagagtAAAGCACTATATGTTGTTGCAAGCATaacattttatcttattttttaacagttgAAAGAACAGCTCCTGAGGCCCATCACAGTGAGCTTGACAAAAgCATTGAATCACTTTGGACTGTAAAAAATGCAGCTGTTCTGATGTCCAAAATTGGCCCATTTAAACTGTTTACTATGGACTTTGCACATCTTGCACCCCATAGAGAATtagagagtgagGTTATAAATGCATATATTCACACTCTAGTCAGCAAATATAATAAGTCACATGAGAGCAAAGCCTACTTGATCGACAGTTTTGCCATGACGAATCTTTGGCAAGGATCTTGTAACATTCTGAGAAAGTTTGATCCAAGCCTATATGGAATCCTTCTTGGTGTCATAAATGACCATCATCACTGGACTCTTGCTGTAATTTATCCATCCGAAAAAAGAAGTGTATTTTTGGATCCTCTCGGAGAATCAAAGACCAACGTGACGAAATGCTTGGAAACAACAAGAGCCTTTATGAGGAGTAAAGGCTGCAATGTATCAAGGTGGACATGTGGAACTGTGCCACATCCACTACAGAGGGACAGTACATCATGTGGTGTTTTTGTTTGCAAGtttgcagAAGGCATGCTTGAAGGCGAGCATTTCCCATTTCTAAACACAGAAGATGCAGTCCGAAAAATCAGAAAGGAAATTGCAGTGAAACTCCTGCAGGAATCCGAAGATTTGTCTGATGTCTGCAGATTCTGTGGGGAAACCACTTCCCATCATGCTGTGGAAACTGATTTGCCTTCTAAATGGATTGCCTGCGATGGATGTGACAAGTGGTTCCACCAGTCTTGTGTAGGGAACCCACCCGAAGAGGAGGAGTTCTTTTGCCAGTTATGCAAACACTAAATTGCACTTCCTATACAGTGACTGAACTAATTCAAGTTGAGGTAGTTGGTCCCAGTAACCTCACAATTACTTAAATGTAGATCAGCTGAGTGCTGAGAGCTTTCGGTCATGTGTGTTTATAATGCACTCAGCTGATCTTCATTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84282 False 785 lncRNA 0.37 2 6727874 6729002
XM_022671278.1 True 1131 mRNA 0.42 9 6728749 6733125

Neighbor

gene id symbol gene type direction distance location
LOC111192868 NA coding downstream 4344 6722102 ~ 6723530 (-)
LOC103029290 prl2,LOC108439418,LOC107655571,LOC107725674,LOC107587154,LOC107582933 coding downstream 583666 6139962 ~ 6144208 (-)
nuak1 nuak1,nuak1a,LOC108439414,LOC107587153,LOC107729860,LOC107690659,LOC107582835 coding downstream 608108 6096340 ~ 6119766 (-)
abcc9 abcc9,LOC108439416 coding downstream 1001591 5664901 ~ 5726283 (-)
kcnj8 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 coding downstream 1064593 5658448 ~ 5663281 (-)
LOC111192905 NA coding upstream 2032 6735157 ~ 6736574 (-)
gpr85 gpr85,LOC106576049,LOC107580073 coding upstream 118043 6851168 ~ 6855742 (-)
LOC103043330 NA coding upstream 198038 6931163 ~ 6955225 (-)
tfec tfec coding upstream 728702 7461827 ~ 7533411 (-)
utp20 utp20,LOC107583990,LOC107576235,LOC107735256 coding upstream 820140 7553265 ~ 7602288 (-)
G62492 NA non-coding downstream 14994 6712063 ~ 6712880 (-)
G62486 NA non-coding downstream 29260 6695658 ~ 6698614 (-)
G62412 NA non-coding downstream 165577 6562072 ~ 6562297 (-)
G62404 NA non-coding downstream 196051 6430582 ~ 6531823 (-)
G62409 pus7l non-coding downstream 283637 6440953 ~ 6444237 (-)
LOC111192939 NA non-coding upstream 3458 6736583 ~ 6738038 (-)
G62505 NA non-coding upstream 24804 6757929 ~ 6758476 (-)
G62558 NA non-coding upstream 368950 7102075 ~ 7102306 (-)
G62582 NA non-coding upstream 501078 7234203 ~ 7234439 (-)
G62584 NA non-coding upstream 504066 7237191 ~ 7240299 (-)
pphln1 pphln1,LOC108279830 other downstream 32485 6633010 ~ 6695389 (-)
G62377 NA other downstream 352894 6374469 ~ 6374980 (-)
G61942 NA other downstream 2105297 4622213 ~ 4622577 (-)
LOC103039416 cald1a,LOC108425386,LOC107656362,LOC107725991,LOC107658884,LOC107710121 other downstream 2301718 4335118 ~ 4426156 (-)
cdpf1 cdpf1,LOC107695897 other downstream 2881405 3840601 ~ 3846469 (-)
LOC111192940 NA other upstream 54217 6787342 ~ 6859670 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other upstream 884410 7617535 ~ 7619432 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other upstream 1433360 8166485 ~ 8173816 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 2885536 9618661 ~ 9622788 (-)
G63217 NA other upstream 3581674 10314799 ~ 10411231 (-)

Expression


Co-expression Network