G62645 (arl1)


Basic Information

Item Value
gene id G62645
gene name arl1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 7549129 ~ 7553237 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU84456
TTGTTTATTGACCATAGCTTTATTTCAATGTTAAAACTGATCTCAATGGTACTGTCCACTGTACATGCTTGTCTATAAATACGCAATGACAAGTCCATCGCATACAAATGACAAATCATCTTAAATAACAAACCACTAAAATTCCAAAGTCAGATACCAAAGCTGATTAGTATTCAAAGGGGACGAAGCGACTGTAAGGCGGGGGTGAAGTCTGATACCAGGCCTTAAAAAGGAGAAAATACAAGAAGCAGAACTCTAAAATTACAAGACACTGATGTAGTGGATATGTCTTacagaaagggaaagaaaaacagGTCAAGCGAGCGTCAGTACAGACAATCACCAGAACATTAACAATTTTTGTACAGGGTCTCCATTTGAACTGGGGACCTCTTGCCTGCCATTCAGTTCATTTGGCCATACTGCCACCCGTCTGTTTCATTGCTGCAGTGTCTCCTCTTTACTGGAAGGACCAGGAAAGTAATATAGCTTTCACACAGTAGGGAAGAATGCAGCCACTGGTCCAAAGGGCACCCAGCAAGTCTTTCAACAGGGGCTCAGAAGACAAGAGTATTTACAGAGTGACGTTTGTGCAATTACTGCCTGCTCTTCAGTGACTCCACCAACCATTCCATGGCCTCATCTAGACCTGTTCCTTTGGTAGCAGATGTTTTGAAAATCTGCCACTTTCTGTCTTTAAGTGCAGGCAAGCCTAATGAATTGGCCACCTCTGTGGGAGTCATAGCCTGCTCCATATCCTGCTTATTGGCAAACACCACTAGGATGGCCTTTTTCAACTCTTCCTCCTCCAACATGGCCACCAGCTCAGACTTTGAGATACCCATCCTATCACGGTCACTGCTGTCCACAACGTAgatcacagcatctgtgttggAGTAGTAGCAGCGCCAGTACGGTCTGATACTTGTCTGTCCACCAAGATCCCATACTTGGAACTTCAGATTCTTATAAGTCACTGTCTCAACGTTGAAACCAATGGTGGGAATTGTAGTAACAACTTCTCCAACTTGCAGTCTGTAGAGTATGGTTGTTTTTCCAGCGCCATCCAGGCCCAAGATAAGGATTCTCATCTCTCTTGTGCCAAAAAGGCCTGAAAACAAGCTGGAGAAGAAGCCCCccattgtactgtactgtagctcAGCCGCTGCTCAGGAGATCGGCTTCCGTCTTCGAAGTTTTAAATGACG

Function

symbol description
arl1 Predicted to enable GTP binding activity; GTPase activity; and enzyme activator activity. Predicted to be involved in several processes, including activation of phospholipase D activity; protein localization to Golgi apparatus; and retrograde transport, endosome to Golgi. Predicted to be located in trans-Golgi network. Predicted to be active in Golgi apparatus. Is expressed in anterior axial hypoblast; axial chorda mesoderm; axis; notochord; and polster. Orthologous to human ARL1 (ADP ribosylation factor like GTPase 1).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84456 True 1208 lncRNA 0.45 6 7549129 7553237

Neighbor

gene id symbol gene type direction distance location
tfec tfec coding downstream 15718 7461827 ~ 7533411 (-)
LOC103043330 NA coding downstream 593904 6931163 ~ 6955225 (-)
gpr85 gpr85,LOC106576049,LOC107580073 coding downstream 693387 6851168 ~ 6855742 (-)
LOC111192905 NA coding downstream 812555 6735157 ~ 6736574 (-)
LOC111192868 NA coding downstream 825599 6722102 ~ 6723530 (-)
utp20 utp20,LOC107583990,LOC107576235,LOC107735256 coding upstream 28 7553265 ~ 7602288 (-)
LOC103047295 LOC108425379,LOC108280009 coding upstream 217499 7770736 ~ 7801165 (-)
LOC111192943 NA coding upstream 380913 7934150 ~ 7946647 (-)
LOC103022071 ntf3 coding upstream 404793 7958030 ~ 7989801 (-)
LOC103036167 rassf3,LOC106576047 coding upstream 621789 8175026 ~ 8214074 (-)
G62624 NA non-coding downstream 3378 7545258 ~ 7545751 (-)
G62606 NA non-coding downstream 144582 7403799 ~ 7404547 (-)
LOC111192869 NA non-coding downstream 177464 7344924 ~ 7371665 (-)
G62592 NA non-coding downstream 205630 7343265 ~ 7343499 (-)
G62584 NA non-coding downstream 308830 7237191 ~ 7240299 (-)
G62659 NA non-coding upstream 63720 7616957 ~ 7617395 (-)
G62661 tmem209,LOC107583965,LOC107725925,LOC107658886 non-coding upstream 67689 7620926 ~ 7624045 (-)
G62732 NA non-coding upstream 257316 7810553 ~ 7810782 (-)
G62748 NA non-coding upstream 396598 7949835 ~ 7951434 (-)
G62821 NA non-coding upstream 724448 8277685 ~ 8279994 (-)
LOC111192940 NA other downstream 689459 6787342 ~ 6859670 (-)
G62484 NA other downstream 811181 6671610 ~ 6737948 (-)
LOC111192938 NA other downstream 816004 6727874 ~ 6733125 (-)
pphln1 pphln1,LOC108279830 other downstream 853740 6633010 ~ 6695389 (-)
G62377 NA other downstream 1174149 6374469 ~ 6374980 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other upstream 64298 7617535 ~ 7619432 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other upstream 613248 8166485 ~ 8173816 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 2065424 9618661 ~ 9622788 (-)
G63217 NA other upstream 2761562 10314799 ~ 10411231 (-)
G63516 NA other upstream 4767318 12320555 ~ 12380556 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_06944393_06947480 ARL1 coding CI01000020 null 6944324 ~ 6947480 (+)