G62748


Basic Information

Item Value
gene id G62748
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 7949835 ~ 7951434 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU84589
CCAGAGGGTTACACTTATTATGTGCCTGTTTAAGTGTTGTGTTCTTCTTaatggaaccaaaagtggttctgcTATGGCACTGTGCAAAGATCTCTTTTTACACCTTTATCACTGTTCCATCTGCTGTAACATCCCCACAACCTCTTATAAACCCTGGAACCGCTATCATTTCCTCTCATCTCTTGAGCTTTTAAGTTTAACAGAGAGAAATGGATACAGGATAAACATCTAACAAGTTCTAGTCAAACTACTGTATGTCCATTGATCTGCTGCTTGCGAGATAAGTGAAATGGGAAGGACATTAGAATAGGAAGCTATTTGGGAGTGCTGTGATGAAGTGAATAAAACGATCAGAGACTGATACATCAGGGAGTGAATCGAGACAGATGCTGCTTCCTTCGGAGGGAAGCATGGCGTGTTAAGCTTTACAATCCAAAGTTAAATATCCAAAGTTGCTTTAATGCACTGTAGGAGATGTAATGGTGCATTTGAAGACATAAAGATTGCTAATAGAACTTTTATCTGATGGTCTATCTTGGCCAGTGTGTATATCATGACTGACAGACTGTCTTTGCTTTGAGTGAATGCTTTCGGGGTgtgagttttttgttttattaagagTTCACCTAAAATGTCAGCTTCAAGATTTAAACCAGAACCGTGGACCTCCAGACAGGATACGTACATTCCCTTCActgttttattcaatattcCACTGGGAAGCCTCCTCCATCTCTATCTGGAGCTGTAGGAGGAGACTACACCTCACAGATGAACTCACGTTGCTCTCATTTCCGTTAGATGATTGTGAGAATCATGAGCCTACACACTATTTCCAACACATTGCCTTTtcccgtaaaaaaaaaaaaaaaaaaaacgcaaaaagGAGCCCTACATCAAGCACTGGAGTCTGGAAATCCGTTCAGACCCTTCATATACCCTTGACTTTGCTCATGTTTGGATTGTGATTAATTCAAGGAAACATTCCcacatgttgtttttttgttctgtgtGTAAAGCCCCTGCTGGTGTTACTGtgcatactgtatatgtatacaattctttgctgcttttttaaataaataaaagaccaccACCATCATTCTGATCAAGGACCTCAAATCCCCCCATTGGGAATGGCTGAAACCCAAGGACATGTATTCTATATGCTCTCTGTTGCTGATACTGAACACTTCcagttttcaaaaaaaaaggaaagttgTGCCAAACAATACTGTATTCAAGGACCACACACTTTATCCCCCTGATGTCCCAAATATTCTCTCTGGGTATGTCGAGACTGAGTAAACTGTGACAGAAACAGATCTCTATTTTAGTAAGAAAATAAACGACTTGTATGTTGGATGTTTCTCCTTGTGTAGTAAAGTTAGTTTCTTTTTGCCAACAGATCCGATCTCTTATTCACCTGGTGTCCCATTCATATGTTTGGTccttttttctcagtttgctttgtttattaagagtcagttttttttttttgaatatcaATTTTGCTTTCTGATACTTGAAGGAGTGTTGTGAGTGAAACGGCCGACCACTTAAACACAATGTCACCCTCCTCCTGTTACCGCAAGGACTc

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84589 True 1600 lncRNA 0.39 1 7949835 7951434

Neighbor

gene id symbol gene type direction distance location
LOC111192943 NA coding downstream 3188 7934150 ~ 7946647 (-)
LOC103047295 LOC108425379,LOC108280009 coding downstream 148670 7770736 ~ 7801165 (-)
utp20 utp20,LOC107583990,LOC107576235,LOC107735256 coding downstream 347547 7553265 ~ 7602288 (-)
tfec tfec coding downstream 416424 7461827 ~ 7533411 (-)
LOC103043330 NA coding downstream 994610 6931163 ~ 6955225 (-)
LOC103022071 ntf3 coding upstream 6596 7958030 ~ 7989801 (-)
LOC103036167 rassf3,LOC106576047 coding upstream 223592 8175026 ~ 8214074 (-)
LOC103043012 NA coding upstream 273217 8224651 ~ 8252909 (-)
LOC111192944 NA coding upstream 302411 8253845 ~ 8263749 (-)
dgki dgki,LOC108425370 coding upstream 318206 8269640 ~ 8361308 (-)
G62732 NA non-coding downstream 139053 7810553 ~ 7810782 (-)
G62661 tmem209,LOC107583965,LOC107725925,LOC107658886 non-coding downstream 325790 7620926 ~ 7624045 (-)
G62659 NA non-coding downstream 332440 7616957 ~ 7617395 (-)
G62645 arl1 non-coding downstream 396598 7549129 ~ 7553237 (-)
G62624 NA non-coding downstream 404084 7545258 ~ 7545751 (-)
G62821 NA non-coding upstream 326251 8277685 ~ 8279994 (-)
G62832 NA non-coding upstream 381074 8332508 ~ 8333323 (-)
G62858 NA non-coding upstream 482281 8433715 ~ 8434396 (-)
G62907 NA non-coding upstream 695451 8646885 ~ 8647296 (-)
G62950 NA non-coding upstream 1069055 9020489 ~ 9020985 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 330403 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 1090165 6787342 ~ 6859670 (-)
G62484 NA other downstream 1211887 6671610 ~ 6737948 (-)
LOC111192938 NA other downstream 1216710 6727874 ~ 6733125 (-)
pphln1 pphln1,LOC108279830 other downstream 1254446 6633010 ~ 6695389 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other upstream 215051 8166485 ~ 8173816 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other upstream 1667227 9618661 ~ 9622788 (-)
G63217 NA other upstream 2363365 10314799 ~ 10411231 (-)
G63516 NA other upstream 4369121 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 4414034 12365468 ~ 12500663 (-)

Expression


Co-expression Network