rab19 (rab19,LOC108425368,LOC106523538)


Basic Information

Item Value
gene id rab19
gene name rab19,LOC108425368,LOC106523538
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 8401840 ~ 8415039 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU84651
TGTCTGGAGGAACAGGTCCATGGAGGAGGATATGAAGAGGACAGCAGCAGACAGTTCCTATCCTAGTTTTAATAAGCTCAGCCAGGGCTTGTGCCTGTTTAGTGCACTGTTCACTGCATTGCCATGGGagctgagagagaaacagtgagaggaGGACACTTGAGAGGCTGCTAAGAGGCAGCAAGGCTCTACAGGTGGACTGCTTTGTTGTACACACCTGTGTGAAGGAGACTGGAGGGGAATATCTACAGAGGGACAAAGAGAagttttagagaaaaaaaacagttacagtTAGCACTGTTAGGAATGGTCTGCTTTTATACCATCAGAACACAACCTGAGGATAGTTTCTAATGCTGAGTTTTAGCCAACTGACGCCCTAAAGGTTTGTCAAATTGACCACCAGTCAGACCTAAAGTCTGACTACCACACAAAACTGACCATGCAGCCGGCTGGACAGGAACAGGACGACTGTTTCGATTTCTTGTTCAAGATTATCCTGATTGGAGACACTAATGTAGGAAAAACCTGTGTGGTTCAGAGCTTTAAGACTGGACTCTTCTCTGAGAGGCAGCAGAACACCATTGGAGTGGACTTCACCGTTCGGACCCTCAACATAGAGGGTAAAAAAGTAAAGGTAATAAATGTGACCTGGAATCTGAGAGGCAGGTTCAGTTTAACGAGGCATGCTCACTGGCCAAGGAGAGAGGGATTTTAGTAGCTCTGGAAACCTCTGCAAAGGAAAGCCAGAATGTGCAGGAGGCCTTCGTGATGATGGCCCGGGAGCTGCTAGCGAGGAACGGACTGGCGGTGAAGGAGGACGATCCTCGGGTCAATCGCCTTTTACTGCGCTCCAGCTCCAGACCCATTATCAGCCCCACACCCGTCCCTGAGAAAAAGGTCTGCGAGTGCTGACACACCCAAATGGGACTCTAAAACTGGAGACTGAGGGACTGTCTGAAGAACAAGTACTTCCCTATCCATCAAGTCACATTCTGAGTTTCTTAAGGATCAGAAAAGATGTTCAGAACAAATGTTCAGAACATCAGTGGATGCTTGTTTGGCTGTATTCCTACAGCACCTGCGCTACAGGGATGAAACCATAAGCAGTATCTGGGTGTCTGTTATCGGTAGCCCCGTTTTCATCCGAAGGATTGTTACAACACATTTCCTTTTACCTGAAAAAGCTGTGAAGAAGTGCAAcaagtgcagatatttccagacAAGTGGACTGCATAGTGTcattaaacttaaaattgaAAGATTA
>XM_007229829.3
ggttTTGGACCAGCGatttcccgatcatagtggcagcactttaggcCACTGGATCACTCTGCAGCCCAGAAGTGCTGTCTTCTGTGTGGTTTCAGACTCTCCTTACTGTGGCAGAGCATACAAGTGATGGGTGGGACTTGAGCTGTGCTGAGCTTCATTCAGTAGGCCGGGCAGGAACAGTATCAGATAAGGCGTGTGAATGGTTTGAAAGATGGgtggagtgaaagagaggaagagagggcaGGTGCTGAGAGCACGGGTCTGTCTGGAGGAACAGGTCCATGGAGGAGGATATGAAGAGGACAGCAGCAGACAGTTCCTATCCTAGTTTTAATAAGCTCAGCCAGGGCTTGTGCCTGTTTAGTGCACTGTTCACTGCATTGCCATGGGagctgagagagaaacagtgagaggaGGACACTTGAGAGGCTGCTAAGAGGCAGCAAGGCTCTACAGGTGGACTGCTTTGTTGTACACACCTGTGTGAAGGAGACTGGAGGGGAATATCTACAGAGGGACAAAGAGAagttttagagaaaaaaaacagttacagtTAGCACTGTTAGGAATGGTCTGCTTTTATACCATCAGAACACAACCTGAGGATAGTTTCTAATGCTGAGTTTTAGCCAACTGACGCCCTAAAGGTTTGTCAAATTGACCACCAGTCAGACCTAAAGTCTGACTACCACACAAAACTGACCATGCAGCCGGCTGGACAGGAACAGGACGACTGTTTCGATTTCTTGTTCAAGATTATCCTGATTGGAGACACTAATGTAGGAAAAACCTGTGTGGTTCAGAGCTTTAAGACTGGACTCTTCTCTGAGAGGCAGCAGAACACCATTGGAGTGGACTTCACCGTTCGGACCCTCAACATAGAGGGTAAAAAAGTAAAGATGCAGGTTTGGGACACAGCAGGGCAGGAGCGATTCCGCACCATCACCCAGAGCTACTACCGCAGTGCACACGGGGCCATGATCGCCTACGACATCACCCGCAGGGCCACCTTCGAGTCCATCTCGCACTGGATCAATGAGGTGGAGCAGTACGGAGCTGCCAATGTCCTTCTAGCCGTGATAGGTAATAAATGTGACCTGGAATCTGAGAGGCAGGTTCAGTTTAACGAGGCATGCTCACTGGCCAAGGAGAGAGGGATTTTAGTAGCTCTGGAAACCTCTGCAAAGGAAAGCCAGAATGTGCAGGAGGCCTTCGTGATGATGGCCCGGGAGCTGCTAGCGAGGAACGGACTGGCGGTGAAGGAGGACGATCCTCGGGTCAATCGCCTTTTACTGCGCTCCAGCTCCAGACCCATTATCAGCCCCACACCCGTCCCTGAGAAAAAGGTCTGCGAGTGCTGACACACCCAAATGGGACTCTAAAACTGGAGACTGAGGGACTGTCTGAAGAACAAGTACTTCCCTATCCATCAAGTCACATTCTGAGTTTCTTAAGGATCAGAAAAGATGTTCAGAACAAATGTTCAGAACATCAGTGGATGCTTGTTTGGCTGTATTCCTACAGCACCTGCGCTACAGGGATGAAACCATAAGCAGTATCTGGGTGTCTGTTATCGGTAGCCCCGTTTTCATCCGAAGGATTGTTACAACACATTTCCTTTTACCTGAAAAAGCTGTGAAGAAGTGCAAcaagtgcagatatttccagacAAGTGGACTGCATAGTGTcattaaacttaaaattgaAAGATTA

Function

symbol description
rab19 Orthologous to human RAB19 (RAB19, member RAS oncogene family).

NR:

description
ras-related protein Rab-19

GO: NA

KEGG:

id description
K17047 RAB19; Ras-related protein Rab-19

RNA

RNA id representative length rna type GC content exon number start site end site
TU84651 False 1267 lncRNA 0.47 2 8404687 8415039
XM_007229829.3 True 1713 mRNA 0.49 4 8401840 8415039

Neighbor

gene id symbol gene type direction distance location
LOC103021322 LOC108425378,LOC108279462 coding upstream 480616 7820355 ~ 7921224 (+)
smkr1 NA coding upstream 631597 7766846 ~ 7770243 (+)
LOC103023836 strip2 coding upstream 638717 7703112 ~ 7763123 (+)
ahcyl2 ahcyl2,LOC106609228,LOC107725924 coding upstream 714293 7633393 ~ 7687547 (+)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 coding upstream 770462 7620814 ~ 7631378 (+)
ckap4 NA coding downstream 13513 8428552 ~ 8431990 (+)
LOC107197608 LOC107197608,LOC108425361 coding downstream 95476 8510515 ~ 8516534 (+)
LOC103044524 NA coding downstream 102941 8517980 ~ 8525037 (+)
sapcd1 NA coding downstream 152258 8567297 ~ 8572672 (+)
LOC103045143 LOC108425356,LOC108425352,LOC108280014,LOC103363517,LOC107719870,LOC104927640,LOC107699203 coding downstream 374316 8789355 ~ 8882696 (+)
LOC107197604 NA non-coding upstream 27145 8370763 ~ 8374695 (+)
G62710 NA non-coding upstream 450388 7949838 ~ 7951452 (+)
G62685 LOC108425379,LOC108280009 non-coding upstream 614972 7770742 ~ 7786868 (+)
G62656 lyrm5a,etfrf1,lyrm5,LOC103046475 non-coding upstream 782444 7617543 ~ 7619396 (+)
G62644 utp20,LOC107725898 non-coding upstream 799573 7598566 ~ 7602267 (+)
G62807 NA non-coding downstream 18697 8433736 ~ 8434382 (+)
G62810 arfgap3 non-coding downstream 36453 8451492 ~ 8455911 (+)
G62805 pacsin2,LOC103038884,LOC108279716 non-coding downstream 49088 8464127 ~ 8496289 (+)
G62873 NA non-coding downstream 110529 8525568 ~ 8525767 (+)
G62902 NA non-coding downstream 199179 8614218 ~ 8614523 (+)
G62455 gpr85,LOC106576049,LOC107580073 other upstream 1546078 6851230 ~ 6855762 (+)
c7h12orf75 NA other upstream 2407846 5982236 ~ 5993994 (+)
plxnb2 NA other upstream 2434105 5782091 ~ 5967735 (+)
LOC111192936 NA other upstream 2636055 5740555 ~ 5765785 (+)
G61575 NA other upstream 5097842 3296546 ~ 3303998 (+)
LOC103041471 slc37a3,LOC106609230,LOC106576065,LOC107719875,LOC107758206,LOC107601005,LOC107562143 other downstream 111179 8526218 ~ 8540123 (+)
LOC111192948 NA other downstream 1016460 9431499 ~ 9440564 (+)
G63051 NA other downstream 1231540 9646579 ~ 9650087 (+)
G63432 NA other downstream 4053011 12468050 ~ 12468902 (+)
LOC111192955 NA other downstream 4741187 13156226 ~ 13161367 (+)

Expression


Co-expression Network